miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23102 3' -57.5 NC_005178.1 + 26181 0.68 0.361056
Target:  5'- gGCGCG--GCGGUggCCGCugcgggcgugGCgCUGGCu -3'
miRNA:   3'- -CGCGUauUGCCGuaGGCG----------CGgGACCG- -5'
23102 3' -57.5 NC_005178.1 + 30544 0.71 0.254097
Target:  5'- uGUGCAacAUGGCcuUCCuCGCgCCUGGCg -3'
miRNA:   3'- -CGCGUauUGCCGu-AGGcGCG-GGACCG- -5'
23102 3' -57.5 NC_005178.1 + 4288 0.7 0.267626
Target:  5'- -aGCGUGACGGCGgguaUGCCCUGGa -3'
miRNA:   3'- cgCGUAUUGCCGUaggcGCGGGACCg -5'
23102 3' -57.5 NC_005178.1 + 12643 0.7 0.274605
Target:  5'- cGUGCuguACGGCucggcggCCgGCGCgCUGGCg -3'
miRNA:   3'- -CGCGuauUGCCGua-----GG-CGCGgGACCG- -5'
23102 3' -57.5 NC_005178.1 + 12706 0.7 0.296417
Target:  5'- gGCGCGUAucaagcuCGGUAUCUGagggguaGUCCaUGGCg -3'
miRNA:   3'- -CGCGUAUu------GCCGUAGGCg------CGGG-ACCG- -5'
23102 3' -57.5 NC_005178.1 + 16698 0.7 0.296417
Target:  5'- gGCGCA----GGCAUcgcccaacugagCCgGCGCCCUGGUc -3'
miRNA:   3'- -CGCGUauugCCGUA------------GG-CGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 26312 0.7 0.296417
Target:  5'- cGC-CAUGGCGGCGUCaCuCGCCagGGCg -3'
miRNA:   3'- -CGcGUAUUGCCGUAG-GcGCGGgaCCG- -5'
23102 3' -57.5 NC_005178.1 + 16368 0.69 0.335712
Target:  5'- aGCGagucgGGCGGCGgcgCCuaCGCCCUGGg -3'
miRNA:   3'- -CGCgua--UUGCCGUa--GGc-GCGGGACCg -5'
23102 3' -57.5 NC_005178.1 + 1982 0.68 0.352462
Target:  5'- gGCGCGggaaccgcuGCaGCAgaggUCGCGgCCUGGCu -3'
miRNA:   3'- -CGCGUau-------UGcCGUa---GGCGCgGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 17193 0.71 0.254097
Target:  5'- uGUGCucca-GGaCAUCCGCgacGCCCUGGUc -3'
miRNA:   3'- -CGCGuauugCC-GUAGGCG---CGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 23229 0.72 0.222733
Target:  5'- -gGUcgAGC-GCAUCCGCGCCgaGGUg -3'
miRNA:   3'- cgCGuaUUGcCGUAGGCGCGGgaCCG- -5'
23102 3' -57.5 NC_005178.1 + 20013 0.72 0.205538
Target:  5'- -aGCAgAACGGCcagcCCGCGCCCgcugccGGCc -3'
miRNA:   3'- cgCGUaUUGCCGua--GGCGCGGGa-----CCG- -5'
23102 3' -57.5 NC_005178.1 + 16040 0.85 0.023466
Target:  5'- gGCGCGUAGCgGGCuguUCCGCGUgCUGGCc -3'
miRNA:   3'- -CGCGUAUUG-CCGu--AGGCGCGgGACCG- -5'
23102 3' -57.5 NC_005178.1 + 15491 0.77 0.096594
Target:  5'- uGCGCA-AGCaGCAgaCCGCGCaCCUGGCc -3'
miRNA:   3'- -CGCGUaUUGcCGUa-GGCGCG-GGACCG- -5'
23102 3' -57.5 NC_005178.1 + 11113 0.77 0.099126
Target:  5'- cGCGCugcUGAaaauguuUGGCAUCCacaucagcgcggGCGCCCUGGCc -3'
miRNA:   3'- -CGCGu--AUU-------GCCGUAGG------------CGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 28167 0.75 0.124892
Target:  5'- gGCGCcu--CGGCuguAUCCgccucggccgGCGCCCUGGCg -3'
miRNA:   3'- -CGCGuauuGCCG---UAGG----------CGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 4233 0.74 0.139405
Target:  5'- cGCGCAga--GGCccgcgagAagCGCGCCCUGGCu -3'
miRNA:   3'- -CGCGUauugCCG-------UagGCGCGGGACCG- -5'
23102 3' -57.5 NC_005178.1 + 34643 0.74 0.160268
Target:  5'- aGCGCuAUAAgGGCGUguucgaccgCCGCGCCCguagccugaacccUGGCc -3'
miRNA:   3'- -CGCG-UAUUgCCGUA---------GGCGCGGG-------------ACCG- -5'
23102 3' -57.5 NC_005178.1 + 17319 0.74 0.160713
Target:  5'- uGCGCcgGACGGCGgggCCGagguCGCCCagcucGGCa -3'
miRNA:   3'- -CGCGuaUUGCCGUa--GGC----GCGGGa----CCG- -5'
23102 3' -57.5 NC_005178.1 + 16892 0.73 0.189504
Target:  5'- -gGCcgAGCuGC-UCgGCGCCCUGGCc -3'
miRNA:   3'- cgCGuaUUGcCGuAGgCGCGGGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.