Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23112 | 5' | -57.3 | NC_005178.1 | + | 29416 | 0.66 | 0.486464 |
Target: 5'- aUCCC-GCCGGgcGCUGGCUCGguUUCa- -3' miRNA: 3'- -GGGGuCGGUU--CGACCGAGUguAGGac -5' |
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23112 | 5' | -57.3 | NC_005178.1 | + | 14911 | 0.66 | 0.485416 |
Target: 5'- aCCCCAgcGCCAuccuGGUgggagGGUUCaaucgggagacagGCGUCCUGg -3' miRNA: 3'- -GGGGU--CGGU----UCGa----CCGAG-------------UGUAGGAC- -5' |
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23112 | 5' | -57.3 | NC_005178.1 | + | 15986 | 0.66 | 0.476038 |
Target: 5'- aCUCCAGCCGuucGGCUGGaucaugCACAagCCg- -3' miRNA: 3'- -GGGGUCGGU---UCGACCga----GUGUa-GGac -5' |
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23112 | 5' | -57.3 | NC_005178.1 | + | 35882 | 0.66 | 0.454513 |
Target: 5'- -aCCAGCCAguuggucAGCagaUGGCUCGCgcagacGUCCUc -3' miRNA: 3'- ggGGUCGGU-------UCG---ACCGAGUG------UAGGAc -5' |
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23112 | 5' | -57.3 | NC_005178.1 | + | 11153 | 0.67 | 0.415995 |
Target: 5'- gCCCUGGCCGccGCccugGGCUucCugGUCCUGu -3' miRNA: 3'- -GGGGUCGGUu-CGa---CCGA--GugUAGGAC- -5' |
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23112 | 5' | -57.3 | NC_005178.1 | + | 10270 | 0.67 | 0.410248 |
Target: 5'- -gCCGGCCAcgcuggugguagucgAGCagcucGGCggCACGUCCUGg -3' miRNA: 3'- ggGGUCGGU---------------UCGa----CCGa-GUGUAGGAC- -5' |
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23112 | 5' | -57.3 | NC_005178.1 | + | 2403 | 0.67 | 0.397032 |
Target: 5'- cCUCCAGCC-GGCUGGCguuCGUCa-- -3' miRNA: 3'- -GGGGUCGGuUCGACCGaguGUAGgac -5' |
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23112 | 5' | -57.3 | NC_005178.1 | + | 24518 | 0.67 | 0.385008 |
Target: 5'- -aUCGGCCAGGCUGGCcagcagcugcaccuUCACGgcgggCUUGa -3' miRNA: 3'- ggGGUCGGUUCGACCG--------------AGUGUa----GGAC- -5' |
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23112 | 5' | -57.3 | NC_005178.1 | + | 20751 | 0.68 | 0.369653 |
Target: 5'- uCCUgGGCCGgcaGGCUGGCcaGCA-CCUGg -3' miRNA: 3'- -GGGgUCGGU---UCGACCGagUGUaGGAC- -5' |
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23112 | 5' | -57.3 | NC_005178.1 | + | 9456 | 0.68 | 0.360818 |
Target: 5'- aCCCGgaaagcagagacGCCccuAGCUGGCgggUCGCcAUCCUGg -3' miRNA: 3'- gGGGU------------CGGu--UCGACCG---AGUG-UAGGAC- -5' |
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23112 | 5' | -57.3 | NC_005178.1 | + | 18064 | 0.68 | 0.360818 |
Target: 5'- gCCCGGUCGcucgcgagcAGCUGGCgaaccugcCGCAgcgCCUGg -3' miRNA: 3'- gGGGUCGGU---------UCGACCGa-------GUGUa--GGAC- -5' |
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23112 | 5' | -57.3 | NC_005178.1 | + | 20418 | 0.68 | 0.352131 |
Target: 5'- aCCUGGCCAAGCUGcGCgaaACccucggCCUGg -3' miRNA: 3'- gGGGUCGGUUCGAC-CGag-UGua----GGAC- -5' |
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23112 | 5' | -57.3 | NC_005178.1 | + | 24614 | 0.68 | 0.352131 |
Target: 5'- -gCCGGCCAGcacCUGGCgcgcCACGUCCUc -3' miRNA: 3'- ggGGUCGGUUc--GACCGa---GUGUAGGAc -5' |
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23112 | 5' | -57.3 | NC_005178.1 | + | 2573 | 0.68 | 0.349554 |
Target: 5'- gCCUCGGCCAGcGCggccaaguaggacgcGCUCACGUCCa- -3' miRNA: 3'- -GGGGUCGGUU-CGac-------------CGAGUGUAGGac -5' |
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23112 | 5' | -57.3 | NC_005178.1 | + | 35282 | 0.68 | 0.335207 |
Target: 5'- -aCCGGCCAAGCaucuggccggGGCUCGgGUCUg- -3' miRNA: 3'- ggGGUCGGUUCGa---------CCGAGUgUAGGac -5' |
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23112 | 5' | -57.3 | NC_005178.1 | + | 34480 | 0.68 | 0.335207 |
Target: 5'- gCCCAGUCGGGaacGCUCAUGUCCg- -3' miRNA: 3'- gGGGUCGGUUCgacCGAGUGUAGGac -5' |
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23112 | 5' | -57.3 | NC_005178.1 | + | 12372 | 0.68 | 0.335207 |
Target: 5'- cCCCCGGCgAAGCcaUGGUUgACcgCCa- -3' miRNA: 3'- -GGGGUCGgUUCG--ACCGAgUGuaGGac -5' |
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23112 | 5' | -57.3 | NC_005178.1 | + | 12198 | 0.7 | 0.273534 |
Target: 5'- cUCCCGGCCAGcCUGGCUgGCAUggucgCCa- -3' miRNA: 3'- -GGGGUCGGUUcGACCGAgUGUA-----GGac -5' |
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23112 | 5' | -57.3 | NC_005178.1 | + | 21106 | 0.7 | 0.272823 |
Target: 5'- aCUCAGCguggcggCGAGCUGGCggGCAUCCg- -3' miRNA: 3'- gGGGUCG-------GUUCGACCGagUGUAGGac -5' |
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23112 | 5' | -57.3 | NC_005178.1 | + | 16596 | 0.7 | 0.259609 |
Target: 5'- cCCCUGGUCAAGCUGG---GCGUCCa- -3' miRNA: 3'- -GGGGUCGGUUCGACCgagUGUAGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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