miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23112 5' -57.3 NC_005178.1 + 29416 0.66 0.486464
Target:  5'- aUCCC-GCCGGgcGCUGGCUCGguUUCa- -3'
miRNA:   3'- -GGGGuCGGUU--CGACCGAGUguAGGac -5'
23112 5' -57.3 NC_005178.1 + 14911 0.66 0.485416
Target:  5'- aCCCCAgcGCCAuccuGGUgggagGGUUCaaucgggagacagGCGUCCUGg -3'
miRNA:   3'- -GGGGU--CGGU----UCGa----CCGAG-------------UGUAGGAC- -5'
23112 5' -57.3 NC_005178.1 + 15986 0.66 0.476038
Target:  5'- aCUCCAGCCGuucGGCUGGaucaugCACAagCCg- -3'
miRNA:   3'- -GGGGUCGGU---UCGACCga----GUGUa-GGac -5'
23112 5' -57.3 NC_005178.1 + 35882 0.66 0.454513
Target:  5'- -aCCAGCCAguuggucAGCagaUGGCUCGCgcagacGUCCUc -3'
miRNA:   3'- ggGGUCGGU-------UCG---ACCGAGUG------UAGGAc -5'
23112 5' -57.3 NC_005178.1 + 11153 0.67 0.415995
Target:  5'- gCCCUGGCCGccGCccugGGCUucCugGUCCUGu -3'
miRNA:   3'- -GGGGUCGGUu-CGa---CCGA--GugUAGGAC- -5'
23112 5' -57.3 NC_005178.1 + 10270 0.67 0.410248
Target:  5'- -gCCGGCCAcgcuggugguagucgAGCagcucGGCggCACGUCCUGg -3'
miRNA:   3'- ggGGUCGGU---------------UCGa----CCGa-GUGUAGGAC- -5'
23112 5' -57.3 NC_005178.1 + 2403 0.67 0.397032
Target:  5'- cCUCCAGCC-GGCUGGCguuCGUCa-- -3'
miRNA:   3'- -GGGGUCGGuUCGACCGaguGUAGgac -5'
23112 5' -57.3 NC_005178.1 + 24518 0.67 0.385008
Target:  5'- -aUCGGCCAGGCUGGCcagcagcugcaccuUCACGgcgggCUUGa -3'
miRNA:   3'- ggGGUCGGUUCGACCG--------------AGUGUa----GGAC- -5'
23112 5' -57.3 NC_005178.1 + 20751 0.68 0.369653
Target:  5'- uCCUgGGCCGgcaGGCUGGCcaGCA-CCUGg -3'
miRNA:   3'- -GGGgUCGGU---UCGACCGagUGUaGGAC- -5'
23112 5' -57.3 NC_005178.1 + 18064 0.68 0.360818
Target:  5'- gCCCGGUCGcucgcgagcAGCUGGCgaaccugcCGCAgcgCCUGg -3'
miRNA:   3'- gGGGUCGGU---------UCGACCGa-------GUGUa--GGAC- -5'
23112 5' -57.3 NC_005178.1 + 9456 0.68 0.360818
Target:  5'- aCCCGgaaagcagagacGCCccuAGCUGGCgggUCGCcAUCCUGg -3'
miRNA:   3'- gGGGU------------CGGu--UCGACCG---AGUG-UAGGAC- -5'
23112 5' -57.3 NC_005178.1 + 24614 0.68 0.352131
Target:  5'- -gCCGGCCAGcacCUGGCgcgcCACGUCCUc -3'
miRNA:   3'- ggGGUCGGUUc--GACCGa---GUGUAGGAc -5'
23112 5' -57.3 NC_005178.1 + 20418 0.68 0.352131
Target:  5'- aCCUGGCCAAGCUGcGCgaaACccucggCCUGg -3'
miRNA:   3'- gGGGUCGGUUCGAC-CGag-UGua----GGAC- -5'
23112 5' -57.3 NC_005178.1 + 2573 0.68 0.349554
Target:  5'- gCCUCGGCCAGcGCggccaaguaggacgcGCUCACGUCCa- -3'
miRNA:   3'- -GGGGUCGGUU-CGac-------------CGAGUGUAGGac -5'
23112 5' -57.3 NC_005178.1 + 35282 0.68 0.335207
Target:  5'- -aCCGGCCAAGCaucuggccggGGCUCGgGUCUg- -3'
miRNA:   3'- ggGGUCGGUUCGa---------CCGAGUgUAGGac -5'
23112 5' -57.3 NC_005178.1 + 34480 0.68 0.335207
Target:  5'- gCCCAGUCGGGaacGCUCAUGUCCg- -3'
miRNA:   3'- gGGGUCGGUUCgacCGAGUGUAGGac -5'
23112 5' -57.3 NC_005178.1 + 12372 0.68 0.335207
Target:  5'- cCCCCGGCgAAGCcaUGGUUgACcgCCa- -3'
miRNA:   3'- -GGGGUCGgUUCG--ACCGAgUGuaGGac -5'
23112 5' -57.3 NC_005178.1 + 12198 0.7 0.273534
Target:  5'- cUCCCGGCCAGcCUGGCUgGCAUggucgCCa- -3'
miRNA:   3'- -GGGGUCGGUUcGACCGAgUGUA-----GGac -5'
23112 5' -57.3 NC_005178.1 + 21106 0.7 0.272823
Target:  5'- aCUCAGCguggcggCGAGCUGGCggGCAUCCg- -3'
miRNA:   3'- gGGGUCG-------GUUCGACCGagUGUAGGac -5'
23112 5' -57.3 NC_005178.1 + 3725 0.7 0.259609
Target:  5'- aCCgCCAgGCCAAGCUGGC-CACcUUCa- -3'
miRNA:   3'- -GG-GGU-CGGUUCGACCGaGUGuAGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.