miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23117 3' -55.6 NC_005178.1 + 37137 0.71 0.305128
Target:  5'- aGGUCCAGGAgcUAcGCc--GCCAGGCCu -3'
miRNA:   3'- -CCGGGUCCU--GUaCGuuuUGGUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 36116 0.68 0.438973
Target:  5'- cGCCCAGGuugggcuggcGgGUGCAgguggcGAACgAGGCCa -3'
miRNA:   3'- cCGGGUCC----------UgUACGU------UUUGgUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 36040 0.67 0.522698
Target:  5'- gGGgCCGGGGCGaacCAGAACCGcuuGGCCc -3'
miRNA:   3'- -CCgGGUCCUGUac-GUUUUGGU---CCGGc -5'
23117 3' -55.6 NC_005178.1 + 35969 0.69 0.416337
Target:  5'- cGGUCguaaaGGGGCGggucGCAAcgcugccgacuuccGGCCAGGCCGa -3'
miRNA:   3'- -CCGGg----UCCUGUa---CGUU--------------UUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 35822 0.68 0.45309
Target:  5'- cGGCCCAGuucGGCGaGCAgugcaucgcggccguAAGCCAcgcGGCCGc -3'
miRNA:   3'- -CCGGGUC---CUGUaCGU---------------UUUGGU---CCGGC- -5'
23117 3' -55.6 NC_005178.1 + 35704 0.69 0.381465
Target:  5'- uGGCCgAGGACAUgGCGGAugguccgcuCCAGGaCGu -3'
miRNA:   3'- -CCGGgUCCUGUA-CGUUUu--------GGUCCgGC- -5'
23117 3' -55.6 NC_005178.1 + 35515 0.7 0.367
Target:  5'- aGGUCUacGGGGCGUuaucagugaacuggGCGAAgcgcgaccgcauugGCCAGGCCGa -3'
miRNA:   3'- -CCGGG--UCCUGUA--------------CGUUU--------------UGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 35347 0.7 0.337537
Target:  5'- cGGUcuacagCCAGGGCGUGacgcuCCAGGCCc -3'
miRNA:   3'- -CCG------GGUCCUGUACguuuuGGUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 35163 0.68 0.469522
Target:  5'- cGGCUgGaGGACGU-CAcugucGGCCAGGCCGc -3'
miRNA:   3'- -CCGGgU-CCUGUAcGUu----UUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 34723 0.76 0.14237
Target:  5'- aGGUCUAGGGCGUGCAGcACCcccuGGCgGg -3'
miRNA:   3'- -CCGGGUCCUGUACGUUuUGGu---CCGgC- -5'
23117 3' -55.6 NC_005178.1 + 34543 0.7 0.329206
Target:  5'- uGGUCCAGGAa--GCGcu-CCAGGCUGc -3'
miRNA:   3'- -CCGGGUCCUguaCGUuuuGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 34163 0.69 0.400072
Target:  5'- uGGCCCGcacgcgaauGGACGagGCGAGcuGgCGGGCCGc -3'
miRNA:   3'- -CCGGGU---------CCUGUa-CGUUU--UgGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 34102 0.68 0.469522
Target:  5'- --aCCAGGGCcgaCucGGCCAGGCCGg -3'
miRNA:   3'- ccgGGUCCUGuacGuuUUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 33908 0.66 0.600562
Target:  5'- cGCCUGGcGGCgAUGCucggcGGCCGGuGCCGg -3'
miRNA:   3'- cCGGGUC-CUG-UACGuu---UUGGUC-CGGC- -5'
23117 3' -55.6 NC_005178.1 + 33557 0.68 0.469522
Target:  5'- uGGCuuuucuCCAGGACG-GCAu--CgAGGCCGa -3'
miRNA:   3'- -CCG------GGUCCUGUaCGUuuuGgUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 32801 0.67 0.511862
Target:  5'- aGCCggaCGGGcCGUagaaGC-AGACCAGGCCGg -3'
miRNA:   3'- cCGG---GUCCuGUA----CGuUUUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 32403 0.67 0.534718
Target:  5'- cGGCgCCAGGuuGCggGCGuccuccagagacacuGGCUGGGCCGg -3'
miRNA:   3'- -CCG-GGUCC--UGuaCGUu--------------UUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 31756 0.66 0.593788
Target:  5'- uGGCCCgAGGuaauGCcgGCGAcgaccuacagggggcGGCCAGuGCUGg -3'
miRNA:   3'- -CCGGG-UCC----UGuaCGUU---------------UUGGUC-CGGC- -5'
23117 3' -55.6 NC_005178.1 + 31691 0.68 0.459216
Target:  5'- cGGCCgAGGGCcgGUGUAGcGGCCuGGCUu -3'
miRNA:   3'- -CCGGgUCCUG--UACGUU-UUGGuCCGGc -5'
23117 3' -55.6 NC_005178.1 + 30780 0.66 0.575792
Target:  5'- --aCCAGGACAUccgccugGCAGcggucgcggccucGACCuGGGCCGg -3'
miRNA:   3'- ccgGGUCCUGUA-------CGUU-------------UUGG-UCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.