miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23117 3' -55.6 NC_005178.1 + 529 0.71 0.289841
Target:  5'- cGGUCCAGGAacCGUGCccugcgcucACCuGGCCGu -3'
miRNA:   3'- -CCGGGUCCU--GUACGuuu------UGGuCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 1529 0.69 0.400072
Target:  5'- cGGCCCcGGugAaaaUGUAAGugucgcccucgGCCuGGCCGg -3'
miRNA:   3'- -CCGGGuCCugU---ACGUUU-----------UGGuCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 1885 0.73 0.228451
Target:  5'- uGGCCCuGG---UGCAGGcugaggaguaucGCCAGGCCGa -3'
miRNA:   3'- -CCGGGuCCuguACGUUU------------UGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 2168 0.66 0.566839
Target:  5'- uGGCCCucgcuGGuguuCGUcaGCA--GCCGGGCCu -3'
miRNA:   3'- -CCGGGu----CCu---GUA--CGUuuUGGUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 2718 0.66 0.578036
Target:  5'- aGCCC-GGugGUgGCGGcGCCAcGCCGg -3'
miRNA:   3'- cCGGGuCCugUA-CGUUuUGGUcCGGC- -5'
23117 3' -55.6 NC_005178.1 + 3359 0.66 0.58928
Target:  5'- aGGUCCAGcACccgAUGCAcgGCCGgcccuuccGGCCGg -3'
miRNA:   3'- -CCGGGUCcUG---UACGUuuUGGU--------CCGGC- -5'
23117 3' -55.6 NC_005178.1 + 3623 0.67 0.479945
Target:  5'- cGCCCcGGaaaGCcgGC---ACCAGGCCGc -3'
miRNA:   3'- cCGGGuCC---UGuaCGuuuUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 3698 0.71 0.296645
Target:  5'- uGCCCGGcuacaucggcgccGACAUGgAccGCCAGGCCa -3'
miRNA:   3'- cCGGGUC-------------CUGUACgUuuUGGUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 4082 0.66 0.58928
Target:  5'- uGGUCCAGGucgGCAcggugUGCAGGugCuGaGCCGu -3'
miRNA:   3'- -CCGGGUCC---UGU-----ACGUUUugGuC-CGGC- -5'
23117 3' -55.6 NC_005178.1 + 4530 0.71 0.321027
Target:  5'- cGCCCAGGAUGUa-AAGAUCGGGuCCGg -3'
miRNA:   3'- cCGGGUCCUGUAcgUUUUGGUCC-GGC- -5'
23117 3' -55.6 NC_005178.1 + 5289 0.66 0.588153
Target:  5'- cGUUCAGGGCcgGCGcgagcugGAACU-GGCCGa -3'
miRNA:   3'- cCGGGUCCUGuaCGU-------UUUGGuCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 5333 0.7 0.329206
Target:  5'- cGGCCCAGGGCG-GCGucgau-GGCCa -3'
miRNA:   3'- -CCGGGUCCUGUaCGUuuugguCCGGc -5'
23117 3' -55.6 NC_005178.1 + 5949 0.75 0.168713
Target:  5'- uGGCCU-GGACGggGCGGAccagguCCAGGCCGg -3'
miRNA:   3'- -CCGGGuCCUGUa-CGUUUu-----GGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 5986 0.66 0.555699
Target:  5'- -uUCCGGGGCGcUGCc---CCAGGCUGg -3'
miRNA:   3'- ccGGGUCCUGU-ACGuuuuGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 6401 0.73 0.220552
Target:  5'- cGCCCAGGAgccuccagacgaucCGUGCAuuGACCacgggcGGGCCGu -3'
miRNA:   3'- cCGGGUCCU--------------GUACGUu-UUGG------UCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 6495 0.67 0.522698
Target:  5'- -aCCCAGcGGCG-GCGAcGCCuGGCCa -3'
miRNA:   3'- ccGGGUC-CUGUaCGUUuUGGuCCGGc -5'
23117 3' -55.6 NC_005178.1 + 6752 0.73 0.24107
Target:  5'- cGGCCCAGGuCGaggccGCGAccgcuGCCAGGCgGa -3'
miRNA:   3'- -CCGGGUCCuGUa----CGUUu----UGGUCCGgC- -5'
23117 3' -55.6 NC_005178.1 + 7076 0.69 0.37238
Target:  5'- cGGCCCuGGGCGagGCGGuGACCucGGUCGa -3'
miRNA:   3'- -CCGGGuCCUGUa-CGUU-UUGGu-CCGGC- -5'
23117 3' -55.6 NC_005178.1 + 7756 0.67 0.50863
Target:  5'- cGGUccuCCAGGGCggaguccaguccugGUGCGAGGCCAaccGuGCCGa -3'
miRNA:   3'- -CCG---GGUCCUG--------------UACGUUUUGGU---C-CGGC- -5'
23117 3' -55.6 NC_005178.1 + 9345 0.66 0.576914
Target:  5'- cGCUCAGGAgCGUGCc--GCCAGcagucgccagggcGCCGg -3'
miRNA:   3'- cCGGGUCCU-GUACGuuuUGGUC-------------CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.