Results 1 - 20 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 23445 | 0.69 | 0.375996 |
Target: 5'- cGCCCAGGGCGacgGCcagggcgcccggcgcGAAGCCGgcccgcugcucGGCCGg -3' miRNA: 3'- cCGGGUCCUGUa--CG---------------UUUUGGU-----------CCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 3698 | 0.71 | 0.296645 |
Target: 5'- uGCCCGGcuacaucggcgccGACAUGgAccGCCAGGCCa -3' miRNA: 3'- cCGGGUC-------------CUGUACgUuuUGGUCCGGc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 37137 | 0.71 | 0.305128 |
Target: 5'- aGGUCCAGGAgcUAcGCc--GCCAGGCCu -3' miRNA: 3'- -CCGGGUCCU--GUaCGuuuUGGUCCGGc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 35347 | 0.7 | 0.337537 |
Target: 5'- cGGUcuacagCCAGGGCGUGacgcuCCAGGCCc -3' miRNA: 3'- -CCG------GGUCCUGUACguuuuGGUCCGGc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 26728 | 0.7 | 0.346021 |
Target: 5'- cGCCUGGGACGaaaUGCucGGCgUGGGCCGg -3' miRNA: 3'- cCGGGUCCUGU---ACGuuUUG-GUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 18002 | 0.7 | 0.354657 |
Target: 5'- uGCCCAGGG--UGCccagcuCCAGGCUGg -3' miRNA: 3'- cCGGGUCCUguACGuuuu--GGUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 35515 | 0.7 | 0.367 |
Target: 5'- aGGUCUacGGGGCGUuaucagugaacuggGCGAAgcgcgaccgcauugGCCAGGCCGa -3' miRNA: 3'- -CCGGG--UCCUGUA--------------CGUUU--------------UGGUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 16750 | 0.69 | 0.368788 |
Target: 5'- uGGCCCAGGugAUuggaccacgcuaccGCGAucaggaagcgcugGACCAGGUg- -3' miRNA: 3'- -CCGGGUCCugUA--------------CGUU-------------UUGGUCCGgc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 7076 | 0.69 | 0.37238 |
Target: 5'- cGGCCCuGGGCGagGCGGuGACCucGGUCGa -3' miRNA: 3'- -CCGGGuCCUGUa-CGUU-UUGGu-CCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 529 | 0.71 | 0.289841 |
Target: 5'- cGGUCCAGGAacCGUGCccugcgcucACCuGGCCGu -3' miRNA: 3'- -CCGGGUCCU--GUACGuuu------UGGuCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 17639 | 0.72 | 0.268046 |
Target: 5'- aGUCCAGcGCcgGCAAGACC-GGCCa -3' miRNA: 3'- cCGGGUCcUGuaCGUUUUGGuCCGGc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 19878 | 0.72 | 0.267343 |
Target: 5'- uGGCCCAuGGAUggGCGcccuaugGAuguGCCGGGCUGg -3' miRNA: 3'- -CCGGGU-CCUGuaCGU-------UU---UGGUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 10215 | 0.78 | 0.094943 |
Target: 5'- aGGUCCAGGACAUGCugccggauACCGuccgcgacauGGCCGg -3' miRNA: 3'- -CCGGGUCCUGUACGuuu-----UGGU----------CCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 17873 | 0.77 | 0.126956 |
Target: 5'- aGGUCCAGGACGUGCuccuGGACCcGGUa- -3' miRNA: 3'- -CCGGGUCCUGUACGu---UUUGGuCCGgc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 20394 | 0.76 | 0.146483 |
Target: 5'- cGGCCCuGGACGcccagGCGAccAACCuGGCCa -3' miRNA: 3'- -CCGGGuCCUGUa----CGUU--UUGGuCCGGc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 10091 | 0.76 | 0.150704 |
Target: 5'- uGGCCCGGcGCAUGUu---CCAGGUCGa -3' miRNA: 3'- -CCGGGUCcUGUACGuuuuGGUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 22674 | 0.74 | 0.197153 |
Target: 5'- aGCCCAGGGCGaccucgcCCAGGCCGa -3' miRNA: 3'- cCGGGUCCUGUacguuuuGGUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 1885 | 0.73 | 0.228451 |
Target: 5'- uGGCCCuGG---UGCAGGcugaggaguaucGCCAGGCCGa -3' miRNA: 3'- -CCGGGuCCuguACGUUU------------UGGUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 11305 | 0.72 | 0.247595 |
Target: 5'- cGCCCAGGugGUG----GCCGGGCUc -3' miRNA: 3'- cCGGGUCCugUACguuuUGGUCCGGc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 23355 | 0.72 | 0.261082 |
Target: 5'- cGGCaCCGGGGCGUcGC---ACCAGGgCGg -3' miRNA: 3'- -CCG-GGUCCUGUA-CGuuuUGGUCCgGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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