miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23117 3' -55.6 NC_005178.1 + 11985 0.66 0.578036
Target:  5'- aGCCCuGGuGCggGCugguACCGGGCUGc -3'
miRNA:   3'- cCGGGuCC-UGuaCGuuu-UGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 16816 1.12 0.000333
Target:  5'- cGGCCCAGGACAUGCAAAACCAGGCCGa -3'
miRNA:   3'- -CCGGGUCCUGUACGUUUUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 17805 0.66 0.600562
Target:  5'- cGCCCugauGGACcagGUGCuguACaacaAGGCCGa -3'
miRNA:   3'- cCGGGu---CCUG---UACGuuuUGg---UCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 33908 0.66 0.600562
Target:  5'- cGCCUGGcGGCgAUGCucggcGGCCGGuGCCGg -3'
miRNA:   3'- cCGGGUC-CUG-UACGuu---UUGGUC-CGGC- -5'
23117 3' -55.6 NC_005178.1 + 31756 0.66 0.593788
Target:  5'- uGGCCCgAGGuaauGCcgGCGAcgaccuacagggggcGGCCAGuGCUGg -3'
miRNA:   3'- -CCGGG-UCC----UGuaCGUU---------------UUGGUC-CGGC- -5'
23117 3' -55.6 NC_005178.1 + 27882 0.66 0.58928
Target:  5'- cGCCCAGGGCAacUGgGucAACgGGGCg- -3'
miRNA:   3'- cCGGGUCCUGU--ACgUu-UUGgUCCGgc -5'
23117 3' -55.6 NC_005178.1 + 3359 0.66 0.58928
Target:  5'- aGGUCCAGcACccgAUGCAcgGCCGgcccuuccGGCCGg -3'
miRNA:   3'- -CCGGGUCcUG---UACGUuuUGGU--------CCGGC- -5'
23117 3' -55.6 NC_005178.1 + 29771 0.66 0.588153
Target:  5'- uGGCCuauuucaCAGGaACA-GCGAacAACCcGGCCGa -3'
miRNA:   3'- -CCGG-------GUCC-UGUaCGUU--UUGGuCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 5289 0.66 0.588153
Target:  5'- cGUUCAGGGCcgGCGcgagcugGAACU-GGCCGa -3'
miRNA:   3'- cCGGGUCCUGuaCGU-------UUUGGuCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 21009 0.66 0.578036
Target:  5'- cGCCguGGGCGgcaGCAccGCCAccGGCCu -3'
miRNA:   3'- cCGGguCCUGUa--CGUuuUGGU--CCGGc -5'
23117 3' -55.6 NC_005178.1 + 10215 0.78 0.094943
Target:  5'- aGGUCCAGGACAUGCugccggauACCGuccgcgacauGGCCGg -3'
miRNA:   3'- -CCGGGUCCUGUACGuuu-----UGGU----------CCGGC- -5'
23117 3' -55.6 NC_005178.1 + 11888 0.66 0.578036
Target:  5'- cGCCCAGGcCGUGCGGGA--GGuGCUGu -3'
miRNA:   3'- cCGGGUCCuGUACGUUUUggUC-CGGC- -5'
23117 3' -55.6 NC_005178.1 + 30780 0.66 0.575792
Target:  5'- --aCCAGGACAUccgccugGCAGcggucgcggccucGACCuGGGCCGg -3'
miRNA:   3'- ccgGGUCCUGUA-------CGUU-------------UUGG-UCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 5986 0.66 0.555699
Target:  5'- -uUCCGGGGCGcUGCc---CCAGGCUGg -3'
miRNA:   3'- ccGGGUCCUGU-ACGuuuuGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 20683 0.66 0.549046
Target:  5'- cGGCgCCaAGGACuuggccgGCuugaagagcuaccuGGGCCAGGCCa -3'
miRNA:   3'- -CCG-GG-UCCUGua-----CGu-------------UUUGGUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 36040 0.67 0.522698
Target:  5'- gGGgCCGGGGCGaacCAGAACCGcuuGGCCc -3'
miRNA:   3'- -CCgGGUCCUGUac-GUUUUGGU---CCGGc -5'
23117 3' -55.6 NC_005178.1 + 7756 0.67 0.50863
Target:  5'- cGGUccuCCAGGGCggaguccaguccugGUGCGAGGCCAaccGuGCCGa -3'
miRNA:   3'- -CCG---GGUCCUG--------------UACGUUUUGGU---C-CGGC- -5'
23117 3' -55.6 NC_005178.1 + 14287 0.67 0.501121
Target:  5'- aGGUCCAGGucuucggcuccgGCAaGCGGAugCGcGGCCu -3'
miRNA:   3'- -CCGGGUCC------------UGUaCGUUUugGU-CCGGc -5'
23117 3' -55.6 NC_005178.1 + 27458 0.67 0.479945
Target:  5'- cGGCCCAGcGCAUcaGCcuGGACCAGaagaucGCCGa -3'
miRNA:   3'- -CCGGGUCcUGUA--CGu-UUUGGUC------CGGC- -5'
23117 3' -55.6 NC_005178.1 + 35163 0.68 0.469522
Target:  5'- cGGCUgGaGGACGU-CAcugucGGCCAGGCCGc -3'
miRNA:   3'- -CCGGgU-CCUGUAcGUu----UUGGUCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.