Results 21 - 40 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 3698 | 0.71 | 0.296645 |
Target: 5'- uGCCCGGcuacaucggcgccGACAUGgAccGCCAGGCCa -3' miRNA: 3'- cCGGGUC-------------CUGUACgUuuUGGUCCGGc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 21471 | 0.71 | 0.305128 |
Target: 5'- cGGCCguGGAguaGUGCuuGaacagguacgGCCAGGCCa -3' miRNA: 3'- -CCGGguCCUg--UACGuuU----------UGGUCCGGc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 37137 | 0.71 | 0.305128 |
Target: 5'- aGGUCCAGGAgcUAcGCc--GCCAGGCCu -3' miRNA: 3'- -CCGGGUCCU--GUaCGuuuUGGUCCGGc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 4530 | 0.71 | 0.321027 |
Target: 5'- cGCCCAGGAUGUa-AAGAUCGGGuCCGg -3' miRNA: 3'- cCGGGUCCUGUAcgUUUUGGUCC-GGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 34543 | 0.7 | 0.329206 |
Target: 5'- uGGUCCAGGAa--GCGcu-CCAGGCUGc -3' miRNA: 3'- -CCGGGUCCUguaCGUuuuGGUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 5333 | 0.7 | 0.329206 |
Target: 5'- cGGCCCAGGGCG-GCGucgau-GGCCa -3' miRNA: 3'- -CCGGGUCCUGUaCGUuuugguCCGGc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 35347 | 0.7 | 0.337537 |
Target: 5'- cGGUcuacagCCAGGGCGUGacgcuCCAGGCCc -3' miRNA: 3'- -CCG------GGUCCUGUACguuuuGGUCCGGc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 26728 | 0.7 | 0.346021 |
Target: 5'- cGCCUGGGACGaaaUGCucGGCgUGGGCCGg -3' miRNA: 3'- cCGGGUCCUGU---ACGuuUUG-GUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 18002 | 0.7 | 0.354657 |
Target: 5'- uGCCCAGGG--UGCccagcuCCAGGCUGg -3' miRNA: 3'- cCGGGUCCUguACGuuuu--GGUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 35515 | 0.7 | 0.367 |
Target: 5'- aGGUCUacGGGGCGUuaucagugaacuggGCGAAgcgcgaccgcauugGCCAGGCCGa -3' miRNA: 3'- -CCGGG--UCCUGUA--------------CGUUU--------------UGGUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 16750 | 0.69 | 0.368788 |
Target: 5'- uGGCCCAGGugAUuggaccacgcuaccGCGAucaggaagcgcugGACCAGGUg- -3' miRNA: 3'- -CCGGGUCCugUA--------------CGUU-------------UUGGUCCGgc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 7076 | 0.69 | 0.37238 |
Target: 5'- cGGCCCuGGGCGagGCGGuGACCucGGUCGa -3' miRNA: 3'- -CCGGGuCCUGUa-CGUU-UUGGu-CCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 23445 | 0.69 | 0.375996 |
Target: 5'- cGCCCAGGGCGacgGCcagggcgcccggcgcGAAGCCGgcccgcugcucGGCCGg -3' miRNA: 3'- cCGGGUCCUGUa--CG---------------UUUUGGU-----------CCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 35704 | 0.69 | 0.381465 |
Target: 5'- uGGCCgAGGACAUgGCGGAugguccgcuCCAGGaCGu -3' miRNA: 3'- -CCGGgUCCUGUA-CGUUUu--------GGUCCgGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 17195 | 0.69 | 0.381465 |
Target: 5'- uGCuCCAGGACAUccGCGAcGCCcuGGUCGa -3' miRNA: 3'- cCG-GGUCCUGUA--CGUUuUGGu-CCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 28661 | 0.69 | 0.390696 |
Target: 5'- uGGCCCAGGGucUGgAuguACCGGGCg- -3' miRNA: 3'- -CCGGGUCCUguACgUuu-UGGUCCGgc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 30488 | 0.69 | 0.390696 |
Target: 5'- cGCCCAGGGCcgggcacucaAUGCGGcucagcgcGGCCAGGacaCGa -3' miRNA: 3'- cCGGGUCCUG----------UACGUU--------UUGGUCCg--GC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 1529 | 0.69 | 0.400072 |
Target: 5'- cGGCCCcGGugAaaaUGUAAGugucgcccucgGCCuGGCCGg -3' miRNA: 3'- -CCGGGuCCugU---ACGUUU-----------UGGuCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 34163 | 0.69 | 0.400072 |
Target: 5'- uGGCCCGcacgcgaauGGACGagGCGAGcuGgCGGGCCGc -3' miRNA: 3'- -CCGGGU---------CCUGUa-CGUUU--UgGUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 16522 | 0.69 | 0.400072 |
Target: 5'- cGGCCCAGGu------AggUCAGGCCGg -3' miRNA: 3'- -CCGGGUCCuguacguUuuGGUCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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