miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23117 3' -55.6 NC_005178.1 + 16825 0.66 0.555699
Target:  5'- uGGgUCAGGGCGgcgauggGCuuGGCCuGGCCc -3'
miRNA:   3'- -CCgGGUCCUGUa------CGuuUUGGuCCGGc -5'
23117 3' -55.6 NC_005178.1 + 28923 0.66 0.555699
Target:  5'- aGCCgaaCGGGAuCGUGCGu-ACCuuGGCCGg -3'
miRNA:   3'- cCGG---GUCCU-GUACGUuuUGGu-CCGGC- -5'
23117 3' -55.6 NC_005178.1 + 25434 0.66 0.555699
Target:  5'- cGGCgCAGGcgGCGcGCccaucGGCCAGGCCc -3'
miRNA:   3'- -CCGgGUCC--UGUaCGuu---UUGGUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 20683 0.66 0.549046
Target:  5'- cGGCgCCaAGGACuuggccgGCuugaagagcuaccuGGGCCAGGCCa -3'
miRNA:   3'- -CCG-GG-UCCUGua-----CGu-------------UUUGGUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 28630 0.66 0.544624
Target:  5'- -cCCCAGcGCAcG-GAAGCCGGGCCGa -3'
miRNA:   3'- ccGGGUCcUGUaCgUUUUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 32403 0.67 0.534718
Target:  5'- cGGCgCCAGGuuGCggGCGuccuccagagacacuGGCUGGGCCGg -3'
miRNA:   3'- -CCG-GGUCC--UGuaCGUu--------------UUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 27884 0.67 0.533621
Target:  5'- cGCCUcGGcCGgcucgGCGAAGCCAccGGCCGc -3'
miRNA:   3'- cCGGGuCCuGUa----CGUUUUGGU--CCGGC- -5'
23117 3' -55.6 NC_005178.1 + 36040 0.67 0.522698
Target:  5'- gGGgCCGGGGCGaacCAGAACCGcuuGGCCc -3'
miRNA:   3'- -CCgGGUCCUGUac-GUUUUGGU---CCGGc -5'
23117 3' -55.6 NC_005178.1 + 6495 0.67 0.522698
Target:  5'- -aCCCAGcGGCG-GCGAcGCCuGGCCa -3'
miRNA:   3'- ccGGGUC-CUGUaCGUUuUGGuCCGGc -5'
23117 3' -55.6 NC_005178.1 + 32801 0.67 0.511862
Target:  5'- aGCCggaCGGGcCGUagaaGC-AGACCAGGCCGg -3'
miRNA:   3'- cCGG---GUCCuGUA----CGuUUUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 27243 0.67 0.509706
Target:  5'- cGGCCCucggcuauccgccAGGACGUGCcgccGAGcugcucgacuaccACCAgcguGGCCGg -3'
miRNA:   3'- -CCGGG-------------UCCUGUACG----UUU-------------UGGU----CCGGC- -5'
23117 3' -55.6 NC_005178.1 + 7756 0.67 0.50863
Target:  5'- cGGUccuCCAGGGCggaguccaguccugGUGCGAGGCCAaccGuGCCGa -3'
miRNA:   3'- -CCG---GGUCCUG--------------UACGUUUUGGU---C-CGGC- -5'
23117 3' -55.6 NC_005178.1 + 14287 0.67 0.501121
Target:  5'- aGGUCCAGGucuucggcuccgGCAaGCGGAugCGcGGCCu -3'
miRNA:   3'- -CCGGGUCC------------UGUaCGUUUugGU-CCGGc -5'
23117 3' -55.6 NC_005178.1 + 25514 0.67 0.501121
Target:  5'- aGGgCCAGGGCcaaGCcGAggcGCCAGGUCa -3'
miRNA:   3'- -CCgGGUCCUGua-CGuUU---UGGUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 25397 0.67 0.501121
Target:  5'- uGCuCCAGGACGUcGCGguAGGCgCGGGUCu -3'
miRNA:   3'- cCG-GGUCCUGUA-CGU--UUUG-GUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 27458 0.67 0.479945
Target:  5'- cGGCCCAGcGCAUcaGCcuGGACCAGaagaucGCCGa -3'
miRNA:   3'- -CCGGGUCcUGUA--CGu-UUUGGUC------CGGC- -5'
23117 3' -55.6 NC_005178.1 + 3623 0.67 0.479945
Target:  5'- cGCCCcGGaaaGCcgGC---ACCAGGCCGc -3'
miRNA:   3'- cCGGGuCC---UGuaCGuuuUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 13289 0.67 0.479945
Target:  5'- cGGCUcgCAGGGCGuaauacUGCGGGucgaggggcGCCGGGCUGc -3'
miRNA:   3'- -CCGG--GUCCUGU------ACGUUU---------UGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 21009 0.67 0.479945
Target:  5'- cGGCCCGGucCuugagGUcgAAGACCAGGCgGg -3'
miRNA:   3'- -CCGGGUCcuGua---CG--UUUUGGUCCGgC- -5'
23117 3' -55.6 NC_005178.1 + 20708 0.67 0.479945
Target:  5'- -aUCCAGGAgcgGCGcGACCAGGCUa -3'
miRNA:   3'- ccGGGUCCUguaCGUuUUGGUCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.