miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23117 3' -55.6 NC_005178.1 + 10091 0.76 0.150704
Target:  5'- uGGCCCGGcGCAUGUu---CCAGGUCGa -3'
miRNA:   3'- -CCGGGUCcUGUACGuuuuGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 10093 0.68 0.469522
Target:  5'- uGGUCCAGGcugAUGC---GCUGGGCCGc -3'
miRNA:   3'- -CCGGGUCCug-UACGuuuUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 10215 0.78 0.094943
Target:  5'- aGGUCCAGGACAUGCugccggauACCGuccgcgacauGGCCGg -3'
miRNA:   3'- -CCGGGUCCUGUACGuuu-----UGGU----------CCGGC- -5'
23117 3' -55.6 NC_005178.1 + 10326 0.69 0.409591
Target:  5'- aGGgCCGGGcGCGgagggGCGAAgcgcGCCGGGCUGc -3'
miRNA:   3'- -CCgGGUCC-UGUa----CGUUU----UGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 11305 0.72 0.247595
Target:  5'- cGCCCAGGugGUG----GCCGGGCUc -3'
miRNA:   3'- cCGGGUCCugUACguuuUGGUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 11476 0.68 0.449031
Target:  5'- cGCCCcucGGGCgAUGUcgu-CCAGGCCGu -3'
miRNA:   3'- cCGGGu--CCUG-UACGuuuuGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 11888 0.66 0.578036
Target:  5'- cGCCCAGGcCGUGCGGGA--GGuGCUGu -3'
miRNA:   3'- cCGGGUCCuGUACGUUUUggUC-CGGC- -5'
23117 3' -55.6 NC_005178.1 + 11985 0.66 0.578036
Target:  5'- aGCCCuGGuGCggGCugguACCGGGCUGc -3'
miRNA:   3'- cCGGGuCC-UGuaCGuuu-UGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 12199 0.68 0.44802
Target:  5'- cGGUCCAGGACAccaGCGcGgcucuuuuccagcGCCuGGCCa -3'
miRNA:   3'- -CCGGGUCCUGUa--CGUuU-------------UGGuCCGGc -5'
23117 3' -55.6 NC_005178.1 + 13289 0.67 0.479945
Target:  5'- cGGCUcgCAGGGCGuaauacUGCGGGucgaggggcGCCGGGCUGc -3'
miRNA:   3'- -CCGG--GUCCUGU------ACGUUU---------UGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 14287 0.67 0.501121
Target:  5'- aGGUCCAGGucuucggcuccgGCAaGCGGAugCGcGGCCu -3'
miRNA:   3'- -CCGGGUCC------------UGUaCGUUUugGU-CCGGc -5'
23117 3' -55.6 NC_005178.1 + 14447 0.69 0.419249
Target:  5'- gGGCgCCGGGG--UGCcggagcuggucAGGGCCAGGCUGa -3'
miRNA:   3'- -CCG-GGUCCUguACG-----------UUUUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 15529 0.66 0.566839
Target:  5'- cGGCUU-GGugGUGUccagcaGGAACCAGGCgGu -3'
miRNA:   3'- -CCGGGuCCugUACG------UUUUGGUCCGgC- -5'
23117 3' -55.6 NC_005178.1 + 16522 0.69 0.400072
Target:  5'- cGGCCCAGGu------AggUCAGGCCGg -3'
miRNA:   3'- -CCGGGUCCuguacguUuuGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 16750 0.69 0.368788
Target:  5'- uGGCCCAGGugAUuggaccacgcuaccGCGAucaggaagcgcugGACCAGGUg- -3'
miRNA:   3'- -CCGGGUCCugUA--------------CGUU-------------UUGGUCCGgc -5'
23117 3' -55.6 NC_005178.1 + 16816 1.12 0.000333
Target:  5'- cGGCCCAGGACAUGCAAAACCAGGCCGa -3'
miRNA:   3'- -CCGGGUCCUGUACGUUUUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 16825 0.66 0.555699
Target:  5'- uGGgUCAGGGCGgcgauggGCuuGGCCuGGCCc -3'
miRNA:   3'- -CCgGGUCCUGUa------CGuuUUGGuCCGGc -5'
23117 3' -55.6 NC_005178.1 + 16930 0.73 0.216396
Target:  5'- cGGCCCuccuGGAUA-GCGcuguuGAUCAGGCCGu -3'
miRNA:   3'- -CCGGGu---CCUGUaCGUu----UUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 17127 0.67 0.478898
Target:  5'- aGGCCgAGGguuucgcGCA-GCuuGGCCAGGuuGg -3'
miRNA:   3'- -CCGGgUCC-------UGUaCGuuUUGGUCCggC- -5'
23117 3' -55.6 NC_005178.1 + 17170 0.68 0.438973
Target:  5'- cGUCCAGGGCcgGCuucAGGGCggucaGGGCCGc -3'
miRNA:   3'- cCGGGUCCUGuaCG---UUUUGg----UCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.