Results 21 - 40 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23117 | 3' | -55.6 | NC_005178.1 | + | 29771 | 0.66 | 0.588153 |
Target: 5'- uGGCCuauuucaCAGGaACA-GCGAacAACCcGGCCGa -3' miRNA: 3'- -CCGG-------GUCC-UGUaCGUU--UUGGuCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 5289 | 0.66 | 0.588153 |
Target: 5'- cGUUCAGGGCcgGCGcgagcugGAACU-GGCCGa -3' miRNA: 3'- cCGGGUCCUGuaCGU-------UUUGGuCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 21009 | 0.66 | 0.578036 |
Target: 5'- cGCCguGGGCGgcaGCAccGCCAccGGCCu -3' miRNA: 3'- cCGGguCCUGUa--CGUuuUGGU--CCGGc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 28923 | 0.66 | 0.555699 |
Target: 5'- aGCCgaaCGGGAuCGUGCGu-ACCuuGGCCGg -3' miRNA: 3'- cCGG---GUCCU-GUACGUuuUGGu-CCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 15529 | 0.66 | 0.566839 |
Target: 5'- cGGCUU-GGugGUGUccagcaGGAACCAGGCgGu -3' miRNA: 3'- -CCGGGuCCugUACG------UUUUGGUCCGgC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 13289 | 0.67 | 0.479945 |
Target: 5'- cGGCUcgCAGGGCGuaauacUGCGGGucgaggggcGCCGGGCUGc -3' miRNA: 3'- -CCGG--GUCCUGU------ACGUUU---------UGGUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 6495 | 0.67 | 0.522698 |
Target: 5'- -aCCCAGcGGCG-GCGAcGCCuGGCCa -3' miRNA: 3'- ccGGGUC-CUGUaCGUUuUGGuCCGGc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 32801 | 0.67 | 0.511862 |
Target: 5'- aGCCggaCGGGcCGUagaaGC-AGACCAGGCCGg -3' miRNA: 3'- cCGG---GUCCuGUA----CGuUUUGGUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 32403 | 0.67 | 0.534718 |
Target: 5'- cGGCgCCAGGuuGCggGCGuccuccagagacacuGGCUGGGCCGg -3' miRNA: 3'- -CCG-GGUCC--UGuaCGUu--------------UUGGUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 20708 | 0.67 | 0.479945 |
Target: 5'- -aUCCAGGAgcgGCGcGACCAGGCUa -3' miRNA: 3'- ccGGGUCCUguaCGUuUUGGUCCGGc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 7756 | 0.67 | 0.50863 |
Target: 5'- cGGUccuCCAGGGCggaguccaguccugGUGCGAGGCCAaccGuGCCGa -3' miRNA: 3'- -CCG---GGUCCUG--------------UACGUUUUGGU---C-CGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 14287 | 0.67 | 0.501121 |
Target: 5'- aGGUCCAGGucuucggcuccgGCAaGCGGAugCGcGGCCu -3' miRNA: 3'- -CCGGGUCC------------UGUaCGUUUugGU-CCGGc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 17127 | 0.67 | 0.478898 |
Target: 5'- aGGCCgAGGguuucgcGCA-GCuuGGCCAGGuuGg -3' miRNA: 3'- -CCGGgUCC-------UGUaCGuuUUGGUCCggC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 27884 | 0.67 | 0.533621 |
Target: 5'- cGCCUcGGcCGgcucgGCGAAGCCAccGGCCGc -3' miRNA: 3'- cCGGGuCCuGUa----CGUUUUGGU--CCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 25514 | 0.67 | 0.501121 |
Target: 5'- aGGgCCAGGGCcaaGCcGAggcGCCAGGUCa -3' miRNA: 3'- -CCgGGUCCUGua-CGuUU---UGGUCCGGc -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 21009 | 0.67 | 0.479945 |
Target: 5'- cGGCCCGGucCuugagGUcgAAGACCAGGCgGg -3' miRNA: 3'- -CCGGGUCcuGua---CG--UUUUGGUCCGgC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 25564 | 0.67 | 0.479945 |
Target: 5'- aGCCCGGuaccaGCccGCAccaGGGCUAGGCCGg -3' miRNA: 3'- cCGGGUCc----UGuaCGU---UUUGGUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 3623 | 0.67 | 0.479945 |
Target: 5'- cGCCCcGGaaaGCcgGC---ACCAGGCCGc -3' miRNA: 3'- cCGGGuCC---UGuaCGuuuUGGUCCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 27243 | 0.67 | 0.509706 |
Target: 5'- cGGCCCucggcuauccgccAGGACGUGCcgccGAGcugcucgacuaccACCAgcguGGCCGg -3' miRNA: 3'- -CCGGG-------------UCCUGUACG----UUU-------------UGGU----CCGGC- -5' |
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23117 | 3' | -55.6 | NC_005178.1 | + | 25397 | 0.67 | 0.501121 |
Target: 5'- uGCuCCAGGACGUcGCGguAGGCgCGGGUCu -3' miRNA: 3'- cCG-GGUCCUGUA-CGU--UUUG-GUCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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