miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23117 3' -55.6 NC_005178.1 + 21009 0.67 0.479945
Target:  5'- cGGCCCGGucCuugagGUcgAAGACCAGGCgGg -3'
miRNA:   3'- -CCGGGUCcuGua---CG--UUUUGGUCCGgC- -5'
23117 3' -55.6 NC_005178.1 + 17127 0.67 0.478898
Target:  5'- aGGCCgAGGguuucgcGCA-GCuuGGCCAGGuuGg -3'
miRNA:   3'- -CCGGgUCC-------UGUaCGuuUUGGUCCggC- -5'
23117 3' -55.6 NC_005178.1 + 33557 0.68 0.469522
Target:  5'- uGGCuuuucuCCAGGACG-GCAu--CgAGGCCGa -3'
miRNA:   3'- -CCG------GGUCCUGUaCGUuuuGgUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 35163 0.68 0.469522
Target:  5'- cGGCUgGaGGACGU-CAcugucGGCCAGGCCGc -3'
miRNA:   3'- -CCGGgU-CCUGUAcGUu----UUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 10093 0.68 0.469522
Target:  5'- uGGUCCAGGcugAUGC---GCUGGGCCGc -3'
miRNA:   3'- -CCGGGUCCug-UACGuuuUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 34102 0.68 0.469522
Target:  5'- --aCCAGGGCcgaCucGGCCAGGCCGg -3'
miRNA:   3'- ccgGGUCCUGuacGuuUUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 20887 0.68 0.459216
Target:  5'- cGCCCAGGACc-GCcucGCCAuuGGCUGg -3'
miRNA:   3'- cCGGGUCCUGuaCGuuuUGGU--CCGGC- -5'
23117 3' -55.6 NC_005178.1 + 31691 0.68 0.459216
Target:  5'- cGGCCgAGGGCcgGUGUAGcGGCCuGGCUu -3'
miRNA:   3'- -CCGGgUCCUG--UACGUU-UUGGuCCGGc -5'
23117 3' -55.6 NC_005178.1 + 20448 0.68 0.459216
Target:  5'- uGGCCCAGGACGcggacgucgaGCAGAucGCCGccGCCa -3'
miRNA:   3'- -CCGGGUCCUGUa---------CGUUU--UGGUc-CGGc -5'
23117 3' -55.6 NC_005178.1 + 35822 0.68 0.45309
Target:  5'- cGGCCCAGuucGGCGaGCAgugcaucgcggccguAAGCCAcgcGGCCGc -3'
miRNA:   3'- -CCGGGUC---CUGUaCGU---------------UUUGGU---CCGGC- -5'
23117 3' -55.6 NC_005178.1 + 11476 0.68 0.449031
Target:  5'- cGCCCcucGGGCgAUGUcgu-CCAGGCCGu -3'
miRNA:   3'- cCGGGu--CCUG-UACGuuuuGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 12199 0.68 0.44802
Target:  5'- cGGUCCAGGACAccaGCGcGgcucuuuuccagcGCCuGGCCa -3'
miRNA:   3'- -CCGGGUCCUGUa--CGUuU-------------UGGuCCGGc -5'
23117 3' -55.6 NC_005178.1 + 26280 0.68 0.44802
Target:  5'- aGCUCGGGGCgguuggaGUGCAgguAAACCaccaggauuGGGCCGa -3'
miRNA:   3'- cCGGGUCCUG-------UACGU---UUUGG---------UCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 36116 0.68 0.438973
Target:  5'- cGCCCAGGuugggcuggcGgGUGCAgguggcGAACgAGGCCa -3'
miRNA:   3'- cCGGGUCC----------UgUACGU------UUUGgUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 17170 0.68 0.438973
Target:  5'- cGUCCAGGGCcgGCuucAGGGCggucaGGGCCGc -3'
miRNA:   3'- cCGGGUCCUGuaCG---UUUUGg----UCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 14447 0.69 0.419249
Target:  5'- gGGCgCCGGGG--UGCcggagcuggucAGGGCCAGGCUGa -3'
miRNA:   3'- -CCG-GGUCCUguACG-----------UUUUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 35969 0.69 0.416337
Target:  5'- cGGUCguaaaGGGGCGggucGCAAcgcugccgacuuccGGCCAGGCCGa -3'
miRNA:   3'- -CCGGg----UCCUGUa---CGUU--------------UUGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 25847 0.69 0.409591
Target:  5'- uGGCCguGGccgGCAUuucgGCAGGucaguaccGCCAGGCCa -3'
miRNA:   3'- -CCGGguCC---UGUA----CGUUU--------UGGUCCGGc -5'
23117 3' -55.6 NC_005178.1 + 10326 0.69 0.409591
Target:  5'- aGGgCCGGGcGCGgagggGCGAAgcgcGCCGGGCUGc -3'
miRNA:   3'- -CCgGGUCC-UGUa----CGUUU----UGGUCCGGC- -5'
23117 3' -55.6 NC_005178.1 + 24592 0.69 0.409591
Target:  5'- uGGCCU-GGAacUGgGucACCAGGCCGg -3'
miRNA:   3'- -CCGGGuCCUguACgUuuUGGUCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.