miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23119 3' -55.2 NC_005178.1 + 25176 0.66 0.560088
Target:  5'- aGCCaAGGCC-GCcgGUAGU-GGCCUGg -3'
miRNA:   3'- aUGG-UCUGGuUGuaCGUCAgCCGGAU- -5'
23119 3' -55.2 NC_005178.1 + 37483 0.66 0.55781
Target:  5'- cACCgaGGACCAGCGcgaaugcaucgaGCAGcUCGGCCg- -3'
miRNA:   3'- aUGG--UCUGGUUGUa-----------CGUC-AGCCGGau -5'
23119 3' -55.2 NC_005178.1 + 25879 0.66 0.526233
Target:  5'- cGCCAGGCCAuGCG-GCAGUugcCGGCg-- -3'
miRNA:   3'- aUGGUCUGGU-UGUaCGUCA---GCCGgau -5'
23119 3' -55.2 NC_005178.1 + 3556 0.66 0.526233
Target:  5'- aACCAcauGAUgcgCGACGagGCGGUCGGCCUu -3'
miRNA:   3'- aUGGU---CUG---GUUGUa-CGUCAGCCGGAu -5'
23119 3' -55.2 NC_005178.1 + 35562 0.67 0.502999
Target:  5'- gGCCAGGCCGACcaGCugaucgauaccacGGUCGGCa-- -3'
miRNA:   3'- aUGGUCUGGUUGuaCG-------------UCAGCCGgau -5'
23119 3' -55.2 NC_005178.1 + 21500 0.67 0.493177
Target:  5'- gGCCAGGCCAGCAcGCGGaaCaGCCc- -3'
miRNA:   3'- aUGGUCUGGUUGUaCGUCa-GcCGGau -5'
23119 3' -55.2 NC_005178.1 + 29071 0.67 0.493177
Target:  5'- -cCCAGcuCCAGaggcGUAGUCGGCCUGa -3'
miRNA:   3'- auGGUCu-GGUUgua-CGUCAGCCGGAU- -5'
23119 3' -55.2 NC_005178.1 + 31692 0.67 0.493177
Target:  5'- gGCCgaGGGCCG--GUGUAG-CGGCCUGg -3'
miRNA:   3'- aUGG--UCUGGUugUACGUCaGCCGGAU- -5'
23119 3' -55.2 NC_005178.1 + 27305 0.67 0.493177
Target:  5'- -uCCAGGCgCAGCA-GCGcGcCGGCCUAc -3'
miRNA:   3'- auGGUCUG-GUUGUaCGU-CaGCCGGAU- -5'
23119 3' -55.2 NC_005178.1 + 2442 0.67 0.48237
Target:  5'- gACCGGccGCCAGCG-GCAGcUCGGCg-- -3'
miRNA:   3'- aUGGUC--UGGUUGUaCGUC-AGCCGgau -5'
23119 3' -55.2 NC_005178.1 + 23724 0.67 0.471677
Target:  5'- gACgAGAUCGACGU-CAGUCGcGCCg- -3'
miRNA:   3'- aUGgUCUGGUUGUAcGUCAGC-CGGau -5'
23119 3' -55.2 NC_005178.1 + 4484 0.67 0.471677
Target:  5'- -cCCGGAUaAACccGCAGUUGGCCa- -3'
miRNA:   3'- auGGUCUGgUUGuaCGUCAGCCGGau -5'
23119 3' -55.2 NC_005178.1 + 20660 0.67 0.461107
Target:  5'- gGCCAGGgCGcCGaGCAGcUCGGCCUc -3'
miRNA:   3'- aUGGUCUgGUuGUaCGUC-AGCCGGAu -5'
23119 3' -55.2 NC_005178.1 + 1977 0.68 0.419138
Target:  5'- uUGCC-GACCGugGUaucgauaGCuGGUCGGCCUGg -3'
miRNA:   3'- -AUGGuCUGGUugUA-------CG-UCAGCCGGAU- -5'
23119 3' -55.2 NC_005178.1 + 20163 0.68 0.410239
Target:  5'- gGCCauguAGGCCGAC-UGCAuGUUGGUCUGg -3'
miRNA:   3'- aUGG----UCUGGUUGuACGU-CAGCCGGAU- -5'
23119 3' -55.2 NC_005178.1 + 11353 0.68 0.40049
Target:  5'- cGCCAGAgCCAGCGccacgcccGCAG-CGGCCa- -3'
miRNA:   3'- aUGGUCU-GGUUGUa-------CGUCaGCCGGau -5'
23119 3' -55.2 NC_005178.1 + 5857 0.69 0.39089
Target:  5'- aGCCAGGCCGcuacACcgGCccUCGGCCg- -3'
miRNA:   3'- aUGGUCUGGU----UGuaCGucAGCCGGau -5'
23119 3' -55.2 NC_005178.1 + 2517 0.69 0.363008
Target:  5'- cGCCAGagcuGCCGAC--GCGGUCGGUCa- -3'
miRNA:   3'- aUGGUC----UGGUUGuaCGUCAGCCGGau -5'
23119 3' -55.2 NC_005178.1 + 17123 0.69 0.363008
Target:  5'- gGCCAGGCCGAgGguuucgcGCAGcUUGGCCa- -3'
miRNA:   3'- aUGGUCUGGUUgUa------CGUC-AGCCGGau -5'
23119 3' -55.2 NC_005178.1 + 36008 0.69 0.363008
Target:  5'- cGCCGGACaggcgCGACAUGCGGgCGGCg-- -3'
miRNA:   3'- aUGGUCUG-----GUUGUACGUCaGCCGgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.