Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23124 | 3' | -53.1 | NC_005178.1 | + | 20888 | 0.66 | 0.73034 |
Target: 5'- aUGAcCGCCcugaccaCCGACCGCAAcaccccgcUCCAGgACg -3' miRNA: 3'- gACU-GCGGa------GGUUGGUGUU--------AGGUC-UG- -5' |
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23124 | 3' | -53.1 | NC_005178.1 | + | 25725 | 0.66 | 0.73034 |
Target: 5'- -cGACaGCCUCCAggcgcGCCugAAUgcugCCAGGg -3' miRNA: 3'- gaCUG-CGGAGGU-----UGGugUUA----GGUCUg -5' |
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23124 | 3' | -53.1 | NC_005178.1 | + | 7297 | 0.66 | 0.73034 |
Target: 5'- -cGACGCCgcCCGGCUGC--UCCAGcGCa -3' miRNA: 3'- gaCUGCGGa-GGUUGGUGuuAGGUC-UG- -5' |
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23124 | 3' | -53.1 | NC_005178.1 | + | 10141 | 0.66 | 0.719182 |
Target: 5'- --aGCGCCUCCAgcGCCugGAUUucccccucaUAGGCu -3' miRNA: 3'- gacUGCGGAGGU--UGGugUUAG---------GUCUG- -5' |
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23124 | 3' | -53.1 | NC_005178.1 | + | 95 | 0.66 | 0.719182 |
Target: 5'- gCUGAacucgGCCUCCAucgcuuCCAUcaGAUCgAGGCa -3' miRNA: 3'- -GACUg----CGGAGGUu-----GGUG--UUAGgUCUG- -5' |
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23124 | 3' | -53.1 | NC_005178.1 | + | 5151 | 0.66 | 0.719182 |
Target: 5'- -gGACGCC-CgCAACCugGcgCCGGuCu -3' miRNA: 3'- gaCUGCGGaG-GUUGGugUuaGGUCuG- -5' |
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23124 | 3' | -53.1 | NC_005178.1 | + | 20154 | 0.66 | 0.696593 |
Target: 5'- ---cCGUCUUCAGCUACGccCCGGACg -3' miRNA: 3'- gacuGCGGAGGUUGGUGUuaGGUCUG- -5' |
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23124 | 3' | -53.1 | NC_005178.1 | + | 27087 | 0.66 | 0.696593 |
Target: 5'- gCUGGa-CCggagCauuGCCGCGAUCCAGGCg -3' miRNA: 3'- -GACUgcGGa---Ggu-UGGUGUUAGGUCUG- -5' |
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23124 | 3' | -53.1 | NC_005178.1 | + | 15179 | 0.67 | 0.673728 |
Target: 5'- ----aGCCUCCAGCCGCAcauggCCAacGGCc -3' miRNA: 3'- gacugCGGAGGUUGGUGUua---GGU--CUG- -5' |
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23124 | 3' | -53.1 | NC_005178.1 | + | 6327 | 0.67 | 0.650689 |
Target: 5'- gCUGuCGCC-CCAGuCCgggGCGaacGUCCAGGCg -3' miRNA: 3'- -GACuGCGGaGGUU-GG---UGU---UAGGUCUG- -5' |
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23124 | 3' | -53.1 | NC_005178.1 | + | 27609 | 0.67 | 0.649534 |
Target: 5'- -cGACGCgCUCCAGCaacaACAGgaugcgcuggcccUCCAGGg -3' miRNA: 3'- gaCUGCG-GAGGUUGg---UGUU-------------AGGUCUg -5' |
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23124 | 3' | -53.1 | NC_005178.1 | + | 28229 | 0.67 | 0.639136 |
Target: 5'- -cGGCGCC----GCCGCuAUCCAGGCc -3' miRNA: 3'- gaCUGCGGagguUGGUGuUAGGUCUG- -5' |
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23124 | 3' | -53.1 | NC_005178.1 | + | 12953 | 0.67 | 0.627575 |
Target: 5'- gCUGGCcgGCCUgguGACC-CAGUCCAGGCc -3' miRNA: 3'- -GACUG--CGGAgg-UUGGuGUUAGGUCUG- -5' |
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23124 | 3' | -53.1 | NC_005178.1 | + | 20264 | 0.67 | 0.627575 |
Target: 5'- uCUGACGCCcccaCCAGCCuuuggccUCCAGGa -3' miRNA: 3'- -GACUGCGGa---GGUUGGuguu---AGGUCUg -5' |
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23124 | 3' | -53.1 | NC_005178.1 | + | 2396 | 0.67 | 0.619484 |
Target: 5'- gUGACGuCCUCCAGCCggcuggcguucgucaACGugacgacGUUCGGACc -3' miRNA: 3'- gACUGC-GGAGGUUGG---------------UGU-------UAGGUCUG- -5' |
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23124 | 3' | -53.1 | NC_005178.1 | + | 34338 | 0.67 | 0.616019 |
Target: 5'- gCUGACGUUgCCGACCuugcgcaggaacGCAuagaccugGUCCAGGCu -3' miRNA: 3'- -GACUGCGGaGGUUGG------------UGU--------UAGGUCUG- -5' |
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23124 | 3' | -53.1 | NC_005178.1 | + | 34443 | 0.68 | 0.604478 |
Target: 5'- cCUGGCGCCgagCCAGCUuaucgugaaauACAucgaCCAGAUc -3' miRNA: 3'- -GACUGCGGa--GGUUGG-----------UGUua--GGUCUG- -5' |
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23124 | 3' | -53.1 | NC_005178.1 | + | 9423 | 0.68 | 0.604478 |
Target: 5'- -gGGCGCCgCCAucgguGCCACcgcCCAGGCc -3' miRNA: 3'- gaCUGCGGaGGU-----UGGUGuuaGGUCUG- -5' |
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23124 | 3' | -53.1 | NC_005178.1 | + | 34874 | 0.68 | 0.603325 |
Target: 5'- -gGACGCCUCgGgcgaucacugugcGCCGCcuGAUCgAGGCa -3' miRNA: 3'- gaCUGCGGAGgU-------------UGGUG--UUAGgUCUG- -5' |
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23124 | 3' | -53.1 | NC_005178.1 | + | 24742 | 0.68 | 0.592964 |
Target: 5'- -aGACGCCgaacauggCGGCCGCGAccUCCAGGg -3' miRNA: 3'- gaCUGCGGag------GUUGGUGUU--AGGUCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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