miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23124 5' -56.7 NC_005178.1 + 9655 0.66 0.53303
Target:  5'- uCUGCGCGGcCggugGCUUcgccGAGCCGGc -3'
miRNA:   3'- -GACGCGCCcGa---CGAGuucuUUCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 30633 0.66 0.522196
Target:  5'- gCUGCuGCGGGCcacCUCAGcggcGAGcAGCUGGa -3'
miRNA:   3'- -GACG-CGCCCGac-GAGUU----CUU-UCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 33345 0.66 0.500794
Target:  5'- uCU-CGCGGGCacGCUCGAcauacGAAGCUGGc -3'
miRNA:   3'- -GAcGCGCCCGa-CGAGUUc----UUUCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 26726 0.66 0.500794
Target:  5'- -gGCGCcuGGGacgaaaUGCUCGGcGugGGCCGGa -3'
miRNA:   3'- gaCGCG--CCCg-----ACGAGUU-CuuUCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 20812 0.66 0.499734
Target:  5'- cCU-CGCGGuuUGCUCGgccaugcAGAucAAGCCGGa -3'
miRNA:   3'- -GAcGCGCCcgACGAGU-------UCU--UUCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 14009 0.67 0.483955
Target:  5'- cCUGCgggcuGCGGGCcaGCggagugacgcccugaUCAGGAAcccAGCCGGu -3'
miRNA:   3'- -GACG-----CGCCCGa-CG---------------AGUUCUU---UCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 31717 0.67 0.479788
Target:  5'- uCUGCGCGGGUgucGUUCcuGAuaaugGAGCCc- -3'
miRNA:   3'- -GACGCGCCCGa--CGAGuuCU-----UUCGGcc -5'
23124 5' -56.7 NC_005178.1 + 26457 0.67 0.479788
Target:  5'- -aGCGCGGcGCUGCcggcCGAGGuggauGCgGGa -3'
miRNA:   3'- gaCGCGCC-CGACGa---GUUCUuu---CGgCC- -5'
23124 5' -56.7 NC_005178.1 + 22062 0.67 0.469447
Target:  5'- gUGCGCGGucuGCUGCUUgcGcagcuGCUGGg -3'
miRNA:   3'- gACGCGCC---CGACGAGuuCuuu--CGGCC- -5'
23124 5' -56.7 NC_005178.1 + 24398 0.67 0.469447
Target:  5'- gUGCuGCGGGaaccGCUCAcGGAugAAGCUGGc -3'
miRNA:   3'- gACG-CGCCCga--CGAGU-UCU--UUCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 35802 0.68 0.419557
Target:  5'- cCU-CGCGGGUccGCUCAAGgcGGCCc- -3'
miRNA:   3'- -GAcGCGCCCGa-CGAGUUCuuUCGGcc -5'
23124 5' -56.7 NC_005178.1 + 28459 0.68 0.419557
Target:  5'- --aUGCGGGUgcgaauuuucUGCUCGAcgaucuucuGGAGGCCGGu -3'
miRNA:   3'- gacGCGCCCG----------ACGAGUU---------CUUUCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 32136 0.68 0.413788
Target:  5'- -gGCGgGGGCucuugcccccgaccaUGCagAGGuGAGCCGGg -3'
miRNA:   3'- gaCGCgCCCG---------------ACGagUUCuUUCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 18404 0.68 0.40997
Target:  5'- aUGCGCGGcaucGCUGCUgAAcuGuuGGCCGa -3'
miRNA:   3'- gACGCGCC----CGACGAgUU--CuuUCGGCc -5'
23124 5' -56.7 NC_005178.1 + 9334 0.68 0.400519
Target:  5'- -aGCgGCGGcGCcGCUCAGGAGcguGCCGc -3'
miRNA:   3'- gaCG-CGCC-CGaCGAGUUCUUu--CGGCc -5'
23124 5' -56.7 NC_005178.1 + 8173 0.68 0.373017
Target:  5'- gCUGCGCucguagGGGCUGCUgAugccccGGu--GCCGGu -3'
miRNA:   3'- -GACGCG------CCCGACGAgU------UCuuuCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 28299 0.69 0.364139
Target:  5'- gCUGCG-GGaGCUGC-CGGGGccGCUGGa -3'
miRNA:   3'- -GACGCgCC-CGACGaGUUCUuuCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 33698 0.69 0.330111
Target:  5'- aUGCGCGGcaaGCUGCUguGc--GGCCGGu -3'
miRNA:   3'- gACGCGCC---CGACGAguUcuuUCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 10350 0.7 0.313997
Target:  5'- -cGCGcCGGGCUGCgcuGGccGAGCUGGu -3'
miRNA:   3'- gaCGC-GCCCGACGaguUCu-UUCGGCC- -5'
23124 5' -56.7 NC_005178.1 + 33012 0.7 0.313997
Target:  5'- aCUGgGCGGcGUccgGCUCGauGGGcAGGCCGGa -3'
miRNA:   3'- -GACgCGCC-CGa--CGAGU--UCU-UUCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.