miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23130 3' -57.1 NC_005178.1 + 24755 0.67 0.416721
Target:  5'- --gGCGGCcgcgaccuCCAGGGACU--GCCGGUc -3'
miRNA:   3'- uuaUGCCGc-------GGUUCCUGAacCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 3682 0.67 0.416721
Target:  5'- --cGCGcCGCCAAGGAacUGcCCGGCu -3'
miRNA:   3'- uuaUGCcGCGGUUCCUgaACcGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 12287 0.67 0.407126
Target:  5'- --cGCGGaUGCgcagggcuaauaCAAGGuCUUGGUCGGCc -3'
miRNA:   3'- uuaUGCC-GCG------------GUUCCuGAACCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 17527 0.67 0.397671
Target:  5'- --aACGGcCGgCAGcGGGCgcgGGCUGGCc -3'
miRNA:   3'- uuaUGCC-GCgGUU-CCUGaa-CCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 28300 0.67 0.397671
Target:  5'- -cUGCGGgagcUGCCGGGGccGCUggagUGGCUGGUg -3'
miRNA:   3'- uuAUGCC----GCGGUUCC--UGA----ACCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 22652 0.67 0.388358
Target:  5'- --gAUGGCGCUggGGuCgcGGCUGGa -3'
miRNA:   3'- uuaUGCCGCGGuuCCuGaaCCGGCCg -5'
23130 3' -57.1 NC_005178.1 + 31663 0.67 0.387434
Target:  5'- --gGCGGCGCgucucgcgcuggaCGAuGGGCggccgagGGCCGGUg -3'
miRNA:   3'- uuaUGCCGCG-------------GUU-CCUGaa-----CCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 17329 0.68 0.382839
Target:  5'- --gGCGGgGCCGAGGucgcccagcucggcaGCccGcGCCGGCu -3'
miRNA:   3'- uuaUGCCgCGGUUCC---------------UGaaC-CGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 26471 0.68 0.379189
Target:  5'- gGAUACGGuCGCCGAGuuCUccaagcUGGCCGa- -3'
miRNA:   3'- -UUAUGCC-GCGGUUCcuGA------ACCGGCcg -5'
23130 3' -57.1 NC_005178.1 + 23522 0.68 0.370167
Target:  5'- --cGCGGCGCCGcaauGGCUUcGuGCUGGCc -3'
miRNA:   3'- uuaUGCCGCGGUuc--CUGAA-C-CGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 27264 0.68 0.370167
Target:  5'- --gACGuGcCGCCGAGcugcucGACUaccaccagcgUGGCCGGCa -3'
miRNA:   3'- uuaUGC-C-GCGGUUC------CUGA----------ACCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 16325 0.68 0.361292
Target:  5'- uGAUGCGGCcgGCCGGGGAgcgGGUuuCGGUg -3'
miRNA:   3'- -UUAUGCCG--CGGUUCCUgaaCCG--GCCG- -5'
23130 3' -57.1 NC_005178.1 + 14447 0.68 0.360413
Target:  5'- ----gGGCGCCGGGGugccggaGCUggucagGGCCaGGCu -3'
miRNA:   3'- uuaugCCGCGGUUCC-------UGAa-----CCGG-CCG- -5'
23130 3' -57.1 NC_005178.1 + 25745 0.68 0.353433
Target:  5'- --cAgGGCgGCCAGGGugUccugguccaugugcaGGCCGGCc -3'
miRNA:   3'- uuaUgCCG-CGGUUCCugAa--------------CCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 36038 0.68 0.343992
Target:  5'- ---cCGGgGCCGGGGcgaaccagaaccGCUUGGCCcGCu -3'
miRNA:   3'- uuauGCCgCGGUUCC------------UGAACCGGcCG- -5'
23130 3' -57.1 NC_005178.1 + 33042 0.68 0.343992
Target:  5'- --gGCGGCaCCGAGGGCauu-CCGGCa -3'
miRNA:   3'- uuaUGCCGcGGUUCCUGaaccGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 17994 0.69 0.335568
Target:  5'- uAUGCGGCuGcCCAGGGugcccaGCUccaGGCUGGCg -3'
miRNA:   3'- uUAUGCCG-C-GGUUCC------UGAa--CCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 10001 0.69 0.33307
Target:  5'- --gGCGGC-CCuguucguugagcugGAGGACUUccaGGUCGGCg -3'
miRNA:   3'- uuaUGCCGcGG--------------UUCCUGAA---CCGGCCG- -5'
23130 3' -57.1 NC_005178.1 + 23339 0.69 0.327295
Target:  5'- ---cCGGCGCCcugGGGGAaguccaUGGCCaGGCg -3'
miRNA:   3'- uuauGCCGCGG---UUCCUga----ACCGG-CCG- -5'
23130 3' -57.1 NC_005178.1 + 2729 0.69 0.327295
Target:  5'- --gGCGGCGCCAcgccGGuugucGCCGGCa -3'
miRNA:   3'- uuaUGCCGCGGUu---CCugaacCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.