miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23131 5' -59.3 NC_005178.1 + 3027 0.7 0.199395
Target:  5'- gGACCagGCCGAgCGUGGCGCCCUGgUg -3'
miRNA:   3'- aCUGG--UGGCUgGCGUUGUGGGGCgAg -5'
23131 5' -59.3 NC_005178.1 + 27904 0.7 0.201541
Target:  5'- -aGCCACCGGCCGCGcagaucagaucgaguGCAUCagCCGUUCc -3'
miRNA:   3'- acUGGUGGCUGGCGU---------------UGUGG--GGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 28204 0.7 0.204797
Target:  5'- cGACUGCUGGCgGCAcgcuccugagcgGCGCCgCCGCUa -3'
miRNA:   3'- aCUGGUGGCUGgCGU------------UGUGG-GGCGAg -5'
23131 5' -59.3 NC_005178.1 + 5474 0.7 0.210324
Target:  5'- aGAguUCACCGucuACCGCGugGCGCgCCGCUCc -3'
miRNA:   3'- aCU--GGUGGC---UGGCGU--UGUGgGGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 3121 0.7 0.21598
Target:  5'- gGGCCGgaGAagCGCAGCGCCCgCGCUg -3'
miRNA:   3'- aCUGGUggCUg-GCGUUGUGGG-GCGAg -5'
23131 5' -59.3 NC_005178.1 + 468 0.7 0.221766
Target:  5'- aGGUCGCCGACCGgGACGCCagcgagugcugCCGcCUCg -3'
miRNA:   3'- aCUGGUGGCUGGCgUUGUGG-----------GGC-GAG- -5'
23131 5' -59.3 NC_005178.1 + 8578 0.69 0.233733
Target:  5'- aGGCCgaGCCGGCCcCAacuGCACCaCgCGCUCg -3'
miRNA:   3'- aCUGG--UGGCUGGcGU---UGUGG-G-GCGAG- -5'
23131 5' -59.3 NC_005178.1 + 29278 0.69 0.233733
Target:  5'- uUGuCCGCC-AUCGCAAUAUccguaCCCGCUCg -3'
miRNA:   3'- -ACuGGUGGcUGGCGUUGUG-----GGGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 29116 0.69 0.239918
Target:  5'- cGACUACUgGACCGCGuuugcuaacuACAgCCCGCg- -3'
miRNA:   3'- aCUGGUGG-CUGGCGU----------UGUgGGGCGag -5'
23131 5' -59.3 NC_005178.1 + 10592 0.69 0.239918
Target:  5'- cGGCCgagcgaGCCGgcACCGCAGCaauccACCCUGUUCc -3'
miRNA:   3'- aCUGG------UGGC--UGGCGUUG-----UGGGGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 26911 0.69 0.239918
Target:  5'- aGA-CGCCGGCCGgGgcguuGCGCCCCgGCUUa -3'
miRNA:   3'- aCUgGUGGCUGGCgU-----UGUGGGG-CGAG- -5'
23131 5' -59.3 NC_005178.1 + 18043 0.69 0.246239
Target:  5'- gUGA-CACCGugauCCGUAACAgCCCGgUCg -3'
miRNA:   3'- -ACUgGUGGCu---GGCGUUGUgGGGCgAG- -5'
23131 5' -59.3 NC_005178.1 + 6971 0.69 0.252698
Target:  5'- aUGAgCcguUCGACCGCAGCACCauccucgccaaCCGCUa -3'
miRNA:   3'- -ACUgGu--GGCUGGCGUUGUGG-----------GGCGAg -5'
23131 5' -59.3 NC_005178.1 + 21207 0.69 0.252698
Target:  5'- -cGCCACgGACgGCAcCGaaaCCCGCUCc -3'
miRNA:   3'- acUGGUGgCUGgCGUuGUg--GGGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 22627 0.69 0.252698
Target:  5'- cUGACCAUCG-CCGCGcagaacgccgaGCACaaCGCUCc -3'
miRNA:   3'- -ACUGGUGGCuGGCGU-----------UGUGggGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 32838 0.69 0.259295
Target:  5'- cGACCAUCG-CUGCAAggucaACCUCGUUCc -3'
miRNA:   3'- aCUGGUGGCuGGCGUUg----UGGGGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 15710 0.69 0.259295
Target:  5'- gGACCAUCGAgCCGCcGCGCaaCGcCUCg -3'
miRNA:   3'- aCUGGUGGCU-GGCGuUGUGggGC-GAG- -5'
23131 5' -59.3 NC_005178.1 + 25084 0.69 0.259295
Target:  5'- cGACCAgcUCGGCCGCuACACCgaGCg- -3'
miRNA:   3'- aCUGGU--GGCUGGCGuUGUGGggCGag -5'
23131 5' -59.3 NC_005178.1 + 24388 0.69 0.259295
Target:  5'- aUGuuCACCGcGCCGCAGCcgaccguuGCCCUGCg- -3'
miRNA:   3'- -ACugGUGGC-UGGCGUUG--------UGGGGCGag -5'
23131 5' -59.3 NC_005178.1 + 24649 0.69 0.259295
Target:  5'- -cACCACCGGCCaGCAACugCgCCGa-- -3'
miRNA:   3'- acUGGUGGCUGG-CGUUGugG-GGCgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.