miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23131 5' -59.3 NC_005178.1 + 20897 1.08 0.000286
Target:  5'- cUGACCACCGACCGCAACACCCCGCUCc -3'
miRNA:   3'- -ACUGGUGGCUGGCGUUGUGGGGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 7364 0.75 0.09975
Target:  5'- gUGACCAUCG-CCGCAgaugACGCCCgccaGCUCc -3'
miRNA:   3'- -ACUGGUGGCuGGCGU----UGUGGGg---CGAG- -5'
23131 5' -59.3 NC_005178.1 + 31559 0.75 0.102625
Target:  5'- cGACaCGCCaGCCugggGCAGCGCCCCGCg- -3'
miRNA:   3'- aCUG-GUGGcUGG----CGUUGUGGGGCGag -5'
23131 5' -59.3 NC_005178.1 + 8860 0.74 0.105578
Target:  5'- -cGCCACCGACCGCGAaACCUgGgCUCc -3'
miRNA:   3'- acUGGUGGCUGGCGUUgUGGGgC-GAG- -5'
23131 5' -59.3 NC_005178.1 + 2920 0.74 0.105578
Target:  5'- cGGCCAggUCGAgCCGCAGCugCUCGCUa -3'
miRNA:   3'- aCUGGU--GGCU-GGCGUUGugGGGCGAg -5'
23131 5' -59.3 NC_005178.1 + 20492 0.74 0.118206
Target:  5'- cGGCCuCCGGCCGCAugGCgaagauggCCCGCa- -3'
miRNA:   3'- aCUGGuGGCUGGCGUugUG--------GGGCGag -5'
23131 5' -59.3 NC_005178.1 + 15900 0.74 0.120556
Target:  5'- cGACCACCGGCCGCAAaGCugguuucaacugaaCCCGgaCg -3'
miRNA:   3'- aCUGGUGGCUGGCGUUgUG--------------GGGCgaG- -5'
23131 5' -59.3 NC_005178.1 + 12741 0.72 0.147365
Target:  5'- aUGGCgCAcCCGAaggaaacCCGCGACGCCCUGCg- -3'
miRNA:   3'- -ACUG-GU-GGCU-------GGCGUUGUGGGGCGag -5'
23131 5' -59.3 NC_005178.1 + 11379 0.72 0.149416
Target:  5'- cGGCCACCG-CCGCGccgaugaugauaaagGCGCuaCCUGCUCc -3'
miRNA:   3'- aCUGGUGGCuGGCGU---------------UGUG--GGGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 1125 0.72 0.151911
Target:  5'- --cCCGCCGuCCGUAAucguCGCCCCGUUCc -3'
miRNA:   3'- acuGGUGGCuGGCGUU----GUGGGGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 1707 0.72 0.156155
Target:  5'- cGGCCGCguggcuuaCGGCCGCGAUGCaCUGCUCg -3'
miRNA:   3'- aCUGGUG--------GCUGGCGUUGUGgGGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 14188 0.72 0.160505
Target:  5'- cGACUGCCGcCCugguGCGACGCCCCGgUg -3'
miRNA:   3'- aCUGGUGGCuGG----CGUUGUGGGGCgAg -5'
23131 5' -59.3 NC_005178.1 + 15268 0.71 0.174217
Target:  5'- aGACCACgacgaUGGCCcCGACGCCCUGCa- -3'
miRNA:   3'- aCUGGUG-----GCUGGcGUUGUGGGGCGag -5'
23131 5' -59.3 NC_005178.1 + 3643 0.71 0.174217
Target:  5'- aGGCCGCCGagcaucGCCGCcaggcgcggcagGACGCCCUGgUCc -3'
miRNA:   3'- aCUGGUGGC------UGGCG------------UUGUGGGGCgAG- -5'
23131 5' -59.3 NC_005178.1 + 24911 0.71 0.179015
Target:  5'- cGGCCGCCGAgCCGUAcaGCacgGCCUuaCGCUCg -3'
miRNA:   3'- aCUGGUGGCU-GGCGU--UG---UGGG--GCGAG- -5'
23131 5' -59.3 NC_005178.1 + 27136 0.71 0.18393
Target:  5'- -cGCCugCGGCCGgAAaauauCGCCgCCGCUCg -3'
miRNA:   3'- acUGGugGCUGGCgUU-----GUGG-GGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 24511 0.71 0.18393
Target:  5'- uUGAUCAgCGACgGCAACACCgUCGC-Cg -3'
miRNA:   3'- -ACUGGUgGCUGgCGUUGUGG-GGCGaG- -5'
23131 5' -59.3 NC_005178.1 + 24050 0.71 0.18393
Target:  5'- aGACCGCC-ACCGuCAACaucACCCUGCa- -3'
miRNA:   3'- aCUGGUGGcUGGC-GUUG---UGGGGCGag -5'
23131 5' -59.3 NC_005178.1 + 16423 0.71 0.188963
Target:  5'- aUGACCuACUGGCUGCgGAUGCCCgccaGCUCg -3'
miRNA:   3'- -ACUGG-UGGCUGGCG-UUGUGGGg---CGAG- -5'
23131 5' -59.3 NC_005178.1 + 7253 0.7 0.198862
Target:  5'- gGGCUACCGucgaggcugucuaGCCGCAGCACgCUGC-Cg -3'
miRNA:   3'- aCUGGUGGC-------------UGGCGUUGUGgGGCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.