miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23131 5' -59.3 NC_005178.1 + 18043 0.69 0.246239
Target:  5'- gUGA-CACCGugauCCGUAACAgCCCGgUCg -3'
miRNA:   3'- -ACUgGUGGCu---GGCGUUGUgGGGCgAG- -5'
23131 5' -59.3 NC_005178.1 + 3027 0.7 0.199395
Target:  5'- gGACCagGCCGAgCGUGGCGCCCUGgUg -3'
miRNA:   3'- aCUGG--UGGCUgGCGUUGUGGGGCgAg -5'
23131 5' -59.3 NC_005178.1 + 28204 0.7 0.204797
Target:  5'- cGACUGCUGGCgGCAcgcuccugagcgGCGCCgCCGCUa -3'
miRNA:   3'- aCUGGUGGCUGgCGU------------UGUGG-GGCGAg -5'
23131 5' -59.3 NC_005178.1 + 5474 0.7 0.210324
Target:  5'- aGAguUCACCGucuACCGCGugGCGCgCCGCUCc -3'
miRNA:   3'- aCU--GGUGGC---UGGCGU--UGUGgGGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 3121 0.7 0.21598
Target:  5'- gGGCCGgaGAagCGCAGCGCCCgCGCUg -3'
miRNA:   3'- aCUGGUggCUg-GCGUUGUGGG-GCGAg -5'
23131 5' -59.3 NC_005178.1 + 8578 0.69 0.233733
Target:  5'- aGGCCgaGCCGGCCcCAacuGCACCaCgCGCUCg -3'
miRNA:   3'- aCUGG--UGGCUGGcGU---UGUGG-G-GCGAG- -5'
23131 5' -59.3 NC_005178.1 + 29278 0.69 0.233733
Target:  5'- uUGuCCGCC-AUCGCAAUAUccguaCCCGCUCg -3'
miRNA:   3'- -ACuGGUGGcUGGCGUUGUG-----GGGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 10592 0.69 0.239918
Target:  5'- cGGCCgagcgaGCCGgcACCGCAGCaauccACCCUGUUCc -3'
miRNA:   3'- aCUGG------UGGC--UGGCGUUG-----UGGGGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 29116 0.69 0.239918
Target:  5'- cGACUACUgGACCGCGuuugcuaacuACAgCCCGCg- -3'
miRNA:   3'- aCUGGUGG-CUGGCGU----------UGUgGGGCGag -5'
23131 5' -59.3 NC_005178.1 + 16423 0.71 0.188963
Target:  5'- aUGACCuACUGGCUGCgGAUGCCCgccaGCUCg -3'
miRNA:   3'- -ACUGG-UGGCUGGCG-UUGUGGGg---CGAG- -5'
23131 5' -59.3 NC_005178.1 + 27136 0.71 0.18393
Target:  5'- -cGCCugCGGCCGgAAaauauCGCCgCCGCUCg -3'
miRNA:   3'- acUGGugGCUGGCgUU-----GUGG-GGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 24511 0.71 0.18393
Target:  5'- uUGAUCAgCGACgGCAACACCgUCGC-Cg -3'
miRNA:   3'- -ACUGGUgGCUGgCGUUGUGG-GGCGaG- -5'
23131 5' -59.3 NC_005178.1 + 7364 0.75 0.09975
Target:  5'- gUGACCAUCG-CCGCAgaugACGCCCgccaGCUCc -3'
miRNA:   3'- -ACUGGUGGCuGGCGU----UGUGGGg---CGAG- -5'
23131 5' -59.3 NC_005178.1 + 2920 0.74 0.105578
Target:  5'- cGGCCAggUCGAgCCGCAGCugCUCGCUa -3'
miRNA:   3'- aCUGGU--GGCU-GGCGUUGugGGGCGAg -5'
23131 5' -59.3 NC_005178.1 + 8860 0.74 0.105578
Target:  5'- -cGCCACCGACCGCGAaACCUgGgCUCc -3'
miRNA:   3'- acUGGUGGCUGGCGUUgUGGGgC-GAG- -5'
23131 5' -59.3 NC_005178.1 + 15900 0.74 0.120556
Target:  5'- cGACCACCGGCCGCAAaGCugguuucaacugaaCCCGgaCg -3'
miRNA:   3'- aCUGGUGGCUGGCGUUgUG--------------GGGCgaG- -5'
23131 5' -59.3 NC_005178.1 + 12741 0.72 0.147365
Target:  5'- aUGGCgCAcCCGAaggaaacCCGCGACGCCCUGCg- -3'
miRNA:   3'- -ACUG-GU-GGCU-------GGCGUUGUGGGGCGag -5'
23131 5' -59.3 NC_005178.1 + 1707 0.72 0.156155
Target:  5'- cGGCCGCguggcuuaCGGCCGCGAUGCaCUGCUCg -3'
miRNA:   3'- aCUGGUG--------GCUGGCGUUGUGgGGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 15268 0.71 0.174217
Target:  5'- aGACCACgacgaUGGCCcCGACGCCCUGCa- -3'
miRNA:   3'- aCUGGUG-----GCUGGcGUUGUGGGGCGag -5'
23131 5' -59.3 NC_005178.1 + 24050 0.71 0.18393
Target:  5'- aGACCGCC-ACCGuCAACaucACCCUGCa- -3'
miRNA:   3'- aCUGGUGGcUGGC-GUUG---UGGGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.