miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23131 5' -59.3 NC_005178.1 + 468 0.7 0.221766
Target:  5'- aGGUCGCCGACCGgGACGCCagcgagugcugCCGcCUCg -3'
miRNA:   3'- aCUGGUGGCUGGCgUUGUGG-----------GGC-GAG- -5'
23131 5' -59.3 NC_005178.1 + 644 0.67 0.35805
Target:  5'- gGACaCGCCauaGCCGCA--ACCCCGCc- -3'
miRNA:   3'- aCUG-GUGGc--UGGCGUugUGGGGCGag -5'
23131 5' -59.3 NC_005178.1 + 1125 0.72 0.151911
Target:  5'- --cCCGCCGuCCGUAAucguCGCCCCGUUCc -3'
miRNA:   3'- acuGGUGGCuGGCGUU----GUGGGGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 1399 0.66 0.366653
Target:  5'- uUGACCugGCCaGCagGCGugGCCUCGUUCg -3'
miRNA:   3'- -ACUGG--UGGcUGg-CGUugUGGGGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 1707 0.72 0.156155
Target:  5'- cGGCCGCguggcuuaCGGCCGCGAUGCaCUGCUCg -3'
miRNA:   3'- aCUGGUG--------GCUGGCGUUGUGgGGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 2920 0.74 0.105578
Target:  5'- cGGCCAggUCGAgCCGCAGCugCUCGCUa -3'
miRNA:   3'- aCUGGU--GGCU-GGCGUUGugGGGCGAg -5'
23131 5' -59.3 NC_005178.1 + 3027 0.7 0.199395
Target:  5'- gGACCagGCCGAgCGUGGCGCCCUGgUg -3'
miRNA:   3'- aCUGG--UGGCUgGCGUUGUGGGGCgAg -5'
23131 5' -59.3 NC_005178.1 + 3121 0.7 0.21598
Target:  5'- gGGCCGgaGAagCGCAGCGCCCgCGCUg -3'
miRNA:   3'- aCUGGUggCUg-GCGUUGUGGG-GCGAg -5'
23131 5' -59.3 NC_005178.1 + 3643 0.71 0.174217
Target:  5'- aGGCCGCCGagcaucGCCGCcaggcgcggcagGACGCCCUGgUCc -3'
miRNA:   3'- aCUGGUGGC------UGGCG------------UUGUGGGGCgAG- -5'
23131 5' -59.3 NC_005178.1 + 3764 0.67 0.325067
Target:  5'- gGGCCAUCG-CCaaggGCGGCACCaugCCGCUg -3'
miRNA:   3'- aCUGGUGGCuGG----CGUUGUGG---GGCGAg -5'
23131 5' -59.3 NC_005178.1 + 3894 0.67 0.341271
Target:  5'- cGGCCGCCG-CCGCcacAugACCCC-Ca- -3'
miRNA:   3'- aCUGGUGGCuGGCG---UugUGGGGcGag -5'
23131 5' -59.3 NC_005178.1 + 4414 0.66 0.383388
Target:  5'- aUGaACCGcacCCGACCGCAGCcaccacccaagccACCaCCGCcCa -3'
miRNA:   3'- -AC-UGGU---GGCUGGCGUUG-------------UGG-GGCGaG- -5'
23131 5' -59.3 NC_005178.1 + 4466 0.67 0.317183
Target:  5'- -cACCcuGCCGACCGCuccCGCCCagCGCUa -3'
miRNA:   3'- acUGG--UGGCUGGCGuu-GUGGG--GCGAg -5'
23131 5' -59.3 NC_005178.1 + 4501 0.68 0.309444
Target:  5'- uUGGCCACCuGCCGgAAUGCCCuCGgUg -3'
miRNA:   3'- -ACUGGUGGcUGGCgUUGUGGG-GCgAg -5'
23131 5' -59.3 NC_005178.1 + 4791 0.68 0.294398
Target:  5'- cGGCCGCCugGAUCGCcaauCGCCgCCGCg- -3'
miRNA:   3'- aCUGGUGG--CUGGCGuu--GUGG-GGCGag -5'
23131 5' -59.3 NC_005178.1 + 5474 0.7 0.210324
Target:  5'- aGAguUCACCGucuACCGCGugGCGCgCCGCUCc -3'
miRNA:   3'- aCU--GGUGGC---UGGCGU--UGUGgGGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 6513 0.67 0.341271
Target:  5'- cUGGCCagacagcguaauGCCGuCUGCAucuUCCCGCUCg -3'
miRNA:   3'- -ACUGG------------UGGCuGGCGUuguGGGGCGAG- -5'
23131 5' -59.3 NC_005178.1 + 6971 0.69 0.252698
Target:  5'- aUGAgCcguUCGACCGCAGCACCauccucgccaaCCGCUa -3'
miRNA:   3'- -ACUgGu--GGCUGGCGUUGUGG-----------GGCGAg -5'
23131 5' -59.3 NC_005178.1 + 7253 0.7 0.198862
Target:  5'- gGGCUACCGucgaggcugucuaGCCGCAGCACgCUGC-Cg -3'
miRNA:   3'- aCUGGUGGC-------------UGGCGUUGUGgGGCGaG- -5'
23131 5' -59.3 NC_005178.1 + 7364 0.75 0.09975
Target:  5'- gUGACCAUCG-CCGCAgaugACGCCCgccaGCUCc -3'
miRNA:   3'- -ACUGGUGGCuGGCGU----UGUGGGg---CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.