Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23133 | 3' | -58 | NC_005178.1 | + | 364 | 0.66 | 0.425941 |
Target: 5'- -uGGCGUCAaacucggccUCCAGGCGCAgCgGGUc -3' miRNA: 3'- cgUCGCAGU---------GGGUCCGCGUgGaCUAc -5' |
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23133 | 3' | -58 | NC_005178.1 | + | 1284 | 0.69 | 0.281867 |
Target: 5'- gGCAGCGUCcgaaucGCUCAGaGaCGCugCUGAc- -3' miRNA: 3'- -CGUCGCAG------UGGGUC-C-GCGugGACUac -5' |
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23133 | 3' | -58 | NC_005178.1 | + | 6389 | 0.67 | 0.401219 |
Target: 5'- aGgGGCGUCugCgCucgauugucgcggcgAGGCGCGCCgcGAUGa -3' miRNA: 3'- -CgUCGCAGugG-G---------------UCCGCGUGGa-CUAC- -5' |
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23133 | 3' | -58 | NC_005178.1 | + | 6486 | 0.66 | 0.425941 |
Target: 5'- gGCAGCaaaACCCAgcggcGGCGaCGCCUGGc- -3' miRNA: 3'- -CGUCGcagUGGGU-----CCGC-GUGGACUac -5' |
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23133 | 3' | -58 | NC_005178.1 | + | 8169 | 0.67 | 0.361526 |
Target: 5'- aGCAGCuG-CGCUCguAGGgGCugCUGAUGc -3' miRNA: 3'- -CGUCG-CaGUGGG--UCCgCGugGACUAC- -5' |
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23133 | 3' | -58 | NC_005178.1 | + | 8592 | 0.75 | 0.121093 |
Target: 5'- cGCAGgGUCACCU-GGCGCACggcGAUGg -3' miRNA: 3'- -CGUCgCAGUGGGuCCGCGUGga-CUAC- -5' |
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23133 | 3' | -58 | NC_005178.1 | + | 8819 | 0.71 | 0.222658 |
Target: 5'- gGCaAGaaaGUCGCCCGGcGCGUGCCgGGUGu -3' miRNA: 3'- -CG-UCg--CAGUGGGUC-CGCGUGGaCUAC- -5' |
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23133 | 3' | -58 | NC_005178.1 | + | 10583 | 0.71 | 0.216776 |
Target: 5'- gGUAGCG--AUCCAGGCGCGCCUucUGc -3' miRNA: 3'- -CGUCGCagUGGGUCCGCGUGGAcuAC- -5' |
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23133 | 3' | -58 | NC_005178.1 | + | 11821 | 0.72 | 0.18933 |
Target: 5'- gGCAGC---AUUCAGGCGCGCCUGGa- -3' miRNA: 3'- -CGUCGcagUGGGUCCGCGUGGACUac -5' |
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23133 | 3' | -58 | NC_005178.1 | + | 12135 | 0.66 | 0.45556 |
Target: 5'- gGCGGCGaccaUCGCCUugauccGGGC-CGCCUGcUGg -3' miRNA: 3'- -CGUCGC----AGUGGG------UCCGcGUGGACuAC- -5' |
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23133 | 3' | -58 | NC_005178.1 | + | 12938 | 0.68 | 0.319842 |
Target: 5'- cGUGGCG-CGC-CAGGUGCuggccgGCCUGGUGa -3' miRNA: 3'- -CGUCGCaGUGgGUCCGCG------UGGACUAC- -5' |
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23133 | 3' | -58 | NC_005178.1 | + | 13170 | 0.68 | 0.327882 |
Target: 5'- cGCAGCa-CGCCCAGGCauuCGCCgaGGUGc -3' miRNA: 3'- -CGUCGcaGUGGGUCCGc--GUGGa-CUAC- -5' |
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23133 | 3' | -58 | NC_005178.1 | + | 14083 | 0.74 | 0.128173 |
Target: 5'- aGCAGCGggccggcuUCGCgCCGGGCGC-CCUGGc- -3' miRNA: 3'- -CGUCGC--------AGUG-GGUCCGCGuGGACUac -5' |
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23133 | 3' | -58 | NC_005178.1 | + | 16395 | 0.66 | 0.445562 |
Target: 5'- gGCGG-GUUucaUCAGGUGCGCCUGGg- -3' miRNA: 3'- -CGUCgCAGug-GGUCCGCGUGGACUac -5' |
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23133 | 3' | -58 | NC_005178.1 | + | 16700 | 0.68 | 0.352894 |
Target: 5'- cGCAgGCaUCGCCCAacugagccGGCGC-CCUGGUc -3' miRNA: 3'- -CGU-CGcAGUGGGU--------CCGCGuGGACUAc -5' |
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23133 | 3' | -58 | NC_005178.1 | + | 20393 | 0.66 | 0.425941 |
Target: 5'- cCGGCccuggaCGCCCAGGCGaccaACCUGGc- -3' miRNA: 3'- cGUCGca----GUGGGUCCGCg---UGGACUac -5' |
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23133 | 3' | -58 | NC_005178.1 | + | 20752 | 0.68 | 0.344409 |
Target: 5'- aCAGCagaGCgCCGGGCGUACCUcGGUGc -3' miRNA: 3'- cGUCGcagUG-GGUCCGCGUGGA-CUAC- -5' |
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23133 | 3' | -58 | NC_005178.1 | + | 21145 | 1.1 | 0.000247 |
Target: 5'- gGCAGCGUCACCCAGGCGCACCUGAUGa -3' miRNA: 3'- -CGUCGCAGUGGGUCCGCGUGGACUAC- -5' |
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23133 | 3' | -58 | NC_005178.1 | + | 21380 | 0.67 | 0.379226 |
Target: 5'- aGCAGgGUUACCUucucuucgucGGGCGUGCCgggcgGGUa -3' miRNA: 3'- -CGUCgCAGUGGG----------UCCGCGUGGa----CUAc -5' |
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23133 | 3' | -58 | NC_005178.1 | + | 22767 | 0.66 | 0.45556 |
Target: 5'- aCAGUGagcuauugCACCCAGGCcgACCUGGUc -3' miRNA: 3'- cGUCGCa-------GUGGGUCCGcgUGGACUAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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