miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23133 3' -58 NC_005178.1 + 21145 1.1 0.000247
Target:  5'- gGCAGCGUCACCCAGGCGCACCUGAUGa -3'
miRNA:   3'- -CGUCGCAGUGGGUCCGCGUGGACUAC- -5'
23133 3' -58 NC_005178.1 + 27236 0.77 0.085736
Target:  5'- cCAGCGUCACCgAGGCGaagaacCGCCUGGa- -3'
miRNA:   3'- cGUCGCAGUGGgUCCGC------GUGGACUac -5'
23133 3' -58 NC_005178.1 + 8592 0.75 0.121093
Target:  5'- cGCAGgGUCACCU-GGCGCACggcGAUGg -3'
miRNA:   3'- -CGUCgCAGUGGGuCCGCGUGga-CUAC- -5'
23133 3' -58 NC_005178.1 + 14083 0.74 0.128173
Target:  5'- aGCAGCGggccggcuUCGCgCCGGGCGC-CCUGGc- -3'
miRNA:   3'- -CGUCGC--------AGUG-GGUCCGCGuGGACUac -5'
23133 3' -58 NC_005178.1 + 11821 0.72 0.18933
Target:  5'- gGCAGC---AUUCAGGCGCGCCUGGa- -3'
miRNA:   3'- -CGUCGcagUGGGUCCGCGUGGACUac -5'
23133 3' -58 NC_005178.1 + 25727 0.71 0.211027
Target:  5'- aCAGCc---UCCAGGCGCGCCUGAa- -3'
miRNA:   3'- cGUCGcaguGGGUCCGCGUGGACUac -5'
23133 3' -58 NC_005178.1 + 10583 0.71 0.216776
Target:  5'- gGUAGCG--AUCCAGGCGCGCCUucUGc -3'
miRNA:   3'- -CGUCGCagUGGGUCCGCGUGGAcuAC- -5'
23133 3' -58 NC_005178.1 + 8819 0.71 0.222658
Target:  5'- gGCaAGaaaGUCGCCCGGcGCGUGCCgGGUGu -3'
miRNA:   3'- -CG-UCg--CAGUGGGUC-CGCGUGGaCUAC- -5'
23133 3' -58 NC_005178.1 + 22871 0.7 0.241123
Target:  5'- gGCGGuCGUgGCCCAGGCuauCGCC-GAUGc -3'
miRNA:   3'- -CGUC-GCAgUGGGUCCGc--GUGGaCUAC- -5'
23133 3' -58 NC_005178.1 + 1284 0.69 0.281867
Target:  5'- gGCAGCGUCcgaaucGCUCAGaGaCGCugCUGAc- -3'
miRNA:   3'- -CGUCGCAG------UGGGUC-C-GCGugGACUac -5'
23133 3' -58 NC_005178.1 + 24534 0.68 0.31195
Target:  5'- aGCAGCuG-CACCUucacGGCGgGCUUGAUGu -3'
miRNA:   3'- -CGUCG-CaGUGGGu---CCGCgUGGACUAC- -5'
23133 3' -58 NC_005178.1 + 12938 0.68 0.319842
Target:  5'- cGUGGCG-CGC-CAGGUGCuggccgGCCUGGUGa -3'
miRNA:   3'- -CGUCGCaGUGgGUCCGCG------UGGACUAC- -5'
23133 3' -58 NC_005178.1 + 13170 0.68 0.327882
Target:  5'- cGCAGCa-CGCCCAGGCauuCGCCgaGGUGc -3'
miRNA:   3'- -CGUCGcaGUGGGUCCGc--GUGGa-CUAC- -5'
23133 3' -58 NC_005178.1 + 34505 0.68 0.336071
Target:  5'- gGCGGCGgaccuucggCACCaGGGCGCcacgcucgGCCUGGUc -3'
miRNA:   3'- -CGUCGCa--------GUGGgUCCGCG--------UGGACUAc -5'
23133 3' -58 NC_005178.1 + 20752 0.68 0.344409
Target:  5'- aCAGCagaGCgCCGGGCGUACCUcGGUGc -3'
miRNA:   3'- cGUCGcagUG-GGUCCGCGUGGA-CUAC- -5'
23133 3' -58 NC_005178.1 + 16700 0.68 0.352894
Target:  5'- cGCAgGCaUCGCCCAacugagccGGCGC-CCUGGUc -3'
miRNA:   3'- -CGU-CGcAGUGGGU--------CCGCGuGGACUAc -5'
23133 3' -58 NC_005178.1 + 8169 0.67 0.361526
Target:  5'- aGCAGCuG-CGCUCguAGGgGCugCUGAUGc -3'
miRNA:   3'- -CGUCG-CaGUGGG--UCCgCGugGACUAC- -5'
23133 3' -58 NC_005178.1 + 21380 0.67 0.379226
Target:  5'- aGCAGgGUUACCUucucuucgucGGGCGUGCCgggcgGGUa -3'
miRNA:   3'- -CGUCgCAGUGGG----------UCCGCGUGGa----CUAc -5'
23133 3' -58 NC_005178.1 + 33450 0.67 0.379226
Target:  5'- uGCuGGCGUCguggaugucguaGCCCAcGGC-CACCUGGUc -3'
miRNA:   3'- -CG-UCGCAG------------UGGGU-CCGcGUGGACUAc -5'
23133 3' -58 NC_005178.1 + 30854 0.67 0.388291
Target:  5'- aGCAGUGaggcCGCCCgguccAGGCGCucccCCUGAa- -3'
miRNA:   3'- -CGUCGCa---GUGGG-----UCCGCGu---GGACUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.