Results 1 - 20 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23133 | 3' | -58 | NC_005178.1 | + | 27236 | 0.77 | 0.085736 |
Target: 5'- cCAGCGUCACCgAGGCGaagaacCGCCUGGa- -3' miRNA: 3'- cGUCGCAGUGGgUCCGC------GUGGACUac -5' |
|||||||
23133 | 3' | -58 | NC_005178.1 | + | 21145 | 1.1 | 0.000247 |
Target: 5'- gGCAGCGUCACCCAGGCGCACCUGAUGa -3' miRNA: 3'- -CGUCGCAGUGGGUCCGCGUGGACUAC- -5' |
|||||||
23133 | 3' | -58 | NC_005178.1 | + | 26955 | 0.66 | 0.465678 |
Target: 5'- -gGGCGagaaggCGCagaAGGCGCGCCUGGa- -3' miRNA: 3'- cgUCGCa-----GUGgg-UCCGCGUGGACUac -5' |
|||||||
23133 | 3' | -58 | NC_005178.1 | + | 22767 | 0.66 | 0.45556 |
Target: 5'- aCAGUGagcuauugCACCCAGGCcgACCUGGUc -3' miRNA: 3'- cGUCGCa-------GUGGGUCCGcgUGGACUAc -5' |
|||||||
23133 | 3' | -58 | NC_005178.1 | + | 20393 | 0.66 | 0.425941 |
Target: 5'- cCGGCccuggaCGCCCAGGCGaccaACCUGGc- -3' miRNA: 3'- cGUCGca----GUGGGUCCGCg---UGGACUac -5' |
|||||||
23133 | 3' | -58 | NC_005178.1 | + | 6389 | 0.67 | 0.401219 |
Target: 5'- aGgGGCGUCugCgCucgauugucgcggcgAGGCGCGCCgcGAUGa -3' miRNA: 3'- -CgUCGCAGugG-G---------------UCCGCGUGGa-CUAC- -5' |
|||||||
23133 | 3' | -58 | NC_005178.1 | + | 16700 | 0.68 | 0.352894 |
Target: 5'- cGCAgGCaUCGCCCAacugagccGGCGC-CCUGGUc -3' miRNA: 3'- -CGU-CGcAGUGGGU--------CCGCGuGGACUAc -5' |
|||||||
23133 | 3' | -58 | NC_005178.1 | + | 20752 | 0.68 | 0.344409 |
Target: 5'- aCAGCagaGCgCCGGGCGUACCUcGGUGc -3' miRNA: 3'- cGUCGcagUG-GGUCCGCGUGGA-CUAC- -5' |
|||||||
23133 | 3' | -58 | NC_005178.1 | + | 13170 | 0.68 | 0.327882 |
Target: 5'- cGCAGCa-CGCCCAGGCauuCGCCgaGGUGc -3' miRNA: 3'- -CGUCGcaGUGGGUCCGc--GUGGa-CUAC- -5' |
|||||||
23133 | 3' | -58 | NC_005178.1 | + | 12938 | 0.68 | 0.319842 |
Target: 5'- cGUGGCG-CGC-CAGGUGCuggccgGCCUGGUGa -3' miRNA: 3'- -CGUCGCaGUGgGUCCGCG------UGGACUAC- -5' |
|||||||
23133 | 3' | -58 | NC_005178.1 | + | 1284 | 0.69 | 0.281867 |
Target: 5'- gGCAGCGUCcgaaucGCUCAGaGaCGCugCUGAc- -3' miRNA: 3'- -CGUCGCAG------UGGGUC-C-GCGugGACUac -5' |
|||||||
23133 | 3' | -58 | NC_005178.1 | + | 22871 | 0.7 | 0.241123 |
Target: 5'- gGCGGuCGUgGCCCAGGCuauCGCC-GAUGc -3' miRNA: 3'- -CGUC-GCAgUGGGUCCGc--GUGGaCUAC- -5' |
|||||||
23133 | 3' | -58 | NC_005178.1 | + | 8819 | 0.71 | 0.222658 |
Target: 5'- gGCaAGaaaGUCGCCCGGcGCGUGCCgGGUGu -3' miRNA: 3'- -CG-UCg--CAGUGGGUC-CGCGUGGaCUAC- -5' |
|||||||
23133 | 3' | -58 | NC_005178.1 | + | 25727 | 0.71 | 0.211027 |
Target: 5'- aCAGCc---UCCAGGCGCGCCUGAa- -3' miRNA: 3'- cGUCGcaguGGGUCCGCGUGGACUac -5' |
|||||||
23133 | 3' | -58 | NC_005178.1 | + | 12135 | 0.66 | 0.45556 |
Target: 5'- gGCGGCGaccaUCGCCUugauccGGGC-CGCCUGcUGg -3' miRNA: 3'- -CGUCGC----AGUGGG------UCCGcGUGGACuAC- -5' |
|||||||
23133 | 3' | -58 | NC_005178.1 | + | 16395 | 0.66 | 0.445562 |
Target: 5'- gGCGG-GUUucaUCAGGUGCGCCUGGg- -3' miRNA: 3'- -CGUCgCAGug-GGUCCGCGUGGACUac -5' |
|||||||
23133 | 3' | -58 | NC_005178.1 | + | 24805 | 0.66 | 0.445562 |
Target: 5'- -gGGCGUCGCggguuuccuUCGGGUGCGCCaUGGa- -3' miRNA: 3'- cgUCGCAGUG---------GGUCCGCGUGG-ACUac -5' |
|||||||
23133 | 3' | -58 | NC_005178.1 | + | 6486 | 0.66 | 0.425941 |
Target: 5'- gGCAGCaaaACCCAgcggcGGCGaCGCCUGGc- -3' miRNA: 3'- -CGUCGcagUGGGU-----CCGC-GUGGACUac -5' |
|||||||
23133 | 3' | -58 | NC_005178.1 | + | 364 | 0.66 | 0.425941 |
Target: 5'- -uGGCGUCAaacucggccUCCAGGCGCAgCgGGUc -3' miRNA: 3'- cgUCGCAGU---------GGGUCCGCGUgGaCUAc -5' |
|||||||
23133 | 3' | -58 | NC_005178.1 | + | 26408 | 0.66 | 0.416325 |
Target: 5'- gGCGGCG--GCCaGGGCGCccGCgCUGAUGu -3' miRNA: 3'- -CGUCGCagUGGgUCCGCG--UG-GACUAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home