miRNA display CGI


Results 21 - 26 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23134 3' -64.1 NC_005178.1 + 26162 0.7 0.092918
Target:  5'- uAGCGCCUUuaucaucaucggCGCGGCGGUggCCGCUGCg -3'
miRNA:   3'- -UUGCGGAA------------GCGCCGCCGggGGUGGUG- -5'
23134 3' -64.1 NC_005178.1 + 10398 0.7 0.092658
Target:  5'- gAugGCCUUgcgaGCGGCGGCgauauuuUCCgGCCGCa -3'
miRNA:   3'- -UugCGGAAg---CGCCGCCG-------GGGgUGGUG- -5'
23134 3' -64.1 NC_005178.1 + 22584 0.73 0.062578
Target:  5'- aGGCGCUUgCGgaUGGCGGCCUCgACCACg -3'
miRNA:   3'- -UUGCGGAaGC--GCCGCCGGGGgUGGUG- -5'
23134 3' -64.1 NC_005178.1 + 11362 0.73 0.059113
Target:  5'- cAGCGCCacgccCGCaGCGGCCaCCGCCGCg -3'
miRNA:   3'- -UUGCGGaa---GCGcCGCCGGgGGUGGUG- -5'
23134 3' -64.1 NC_005178.1 + 8994 0.76 0.031411
Target:  5'- cGACGCCcccgguggCGCGGCggacGGCCCCCGCC-Ca -3'
miRNA:   3'- -UUGCGGaa------GCGCCG----CCGGGGGUGGuG- -5'
23134 3' -64.1 NC_005178.1 + 21372 1.05 0.000139
Target:  5'- cAACGCCUUCGCGGCGGCCCCCACCACc -3'
miRNA:   3'- -UUGCGGAAGCGCCGCCGGGGGUGGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.