Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23134 | 3' | -64.1 | NC_005178.1 | + | 26162 | 0.7 | 0.092918 |
Target: 5'- uAGCGCCUUuaucaucaucggCGCGGCGGUggCCGCUGCg -3' miRNA: 3'- -UUGCGGAA------------GCGCCGCCGggGGUGGUG- -5' |
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23134 | 3' | -64.1 | NC_005178.1 | + | 28531 | 0.68 | 0.156314 |
Target: 5'- cGGCGCuacaugaCUggGCGGgGGCCgUCCGCCGCg -3' miRNA: 3'- -UUGCG-------GAagCGCCgCCGG-GGGUGGUG- -5' |
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23134 | 3' | -64.1 | NC_005178.1 | + | 31139 | 0.68 | 0.156736 |
Target: 5'- -uUGUCaUCGCGGC-GCgCCUCGCCGCg -3' miRNA: 3'- uuGCGGaAGCGCCGcCG-GGGGUGGUG- -5' |
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23134 | 3' | -64.1 | NC_005178.1 | + | 31413 | 0.68 | 0.156736 |
Target: 5'- --aGCCUUCGCGGCG-CUaCCGCCu- -3' miRNA: 3'- uugCGGAAGCGCCGCcGGgGGUGGug -5' |
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23134 | 3' | -64.1 | NC_005178.1 | + | 32270 | 0.69 | 0.122648 |
Target: 5'- cGCGCCggCccugaacgGUGGCGGCCUCgGCCAa -3' miRNA: 3'- uUGCGGaaG--------CGCCGCCGGGGgUGGUg -5' |
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23134 | 3' | -64.1 | NC_005178.1 | + | 36166 | 0.66 | 0.193999 |
Target: 5'- -uCGUCUUUGCGGCGggccauguucaaGCCCUCGCUuCg -3' miRNA: 3'- uuGCGGAAGCGCCGC------------CGGGGGUGGuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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