miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23135 3' -57.5 NC_005178.1 + 7250 0.66 0.541963
Target:  5'- gAUGGGCuaccGUCGAGgcugucuagCCGcagcACGCUGCCg -3'
miRNA:   3'- -UGCCCGca--UAGCUCa--------GGC----UGUGGCGG- -5'
23135 3' -57.5 NC_005178.1 + 329 0.66 0.541963
Target:  5'- cCaGGC-UGUCaGGUCCGGCGCUguGCCg -3'
miRNA:   3'- uGcCCGcAUAGcUCAGGCUGUGG--CGG- -5'
23135 3' -57.5 NC_005178.1 + 28545 0.66 0.531311
Target:  5'- aACGGcGCGgagucggcUAUCGAcGUCuaCGGCGCCGUa -3'
miRNA:   3'- -UGCC-CGC--------AUAGCU-CAG--GCUGUGGCGg -5'
23135 3' -57.5 NC_005178.1 + 32121 0.66 0.52919
Target:  5'- cCGGGCcgucgcgacauccGUAUCGAGcuguaCGACggcacggucuaucACCGCCg -3'
miRNA:   3'- uGCCCG-------------CAUAGCUCag---GCUG-------------UGGCGG- -5'
23135 3' -57.5 NC_005178.1 + 8424 0.66 0.520737
Target:  5'- cGCGGGCuGUAguuagcaaaCGcGGUCCaGuaguCGCCGCCa -3'
miRNA:   3'- -UGCCCG-CAUa--------GC-UCAGG-Cu---GUGGCGG- -5'
23135 3' -57.5 NC_005178.1 + 28703 0.66 0.510245
Target:  5'- cGCGGuCGguggcGUCGGGgcucacacCCGGCACgCGCCg -3'
miRNA:   3'- -UGCCcGCa----UAGCUCa-------GGCUGUG-GCGG- -5'
23135 3' -57.5 NC_005178.1 + 25828 0.66 0.499843
Target:  5'- cGCGGGUGUcguUCucGUUgGACGgCGCCc -3'
miRNA:   3'- -UGCCCGCAu--AGcuCAGgCUGUgGCGG- -5'
23135 3' -57.5 NC_005178.1 + 37156 0.66 0.489537
Target:  5'- cCaGGCcUAUcgcacCGAGUCCGAC-CCGCUg -3'
miRNA:   3'- uGcCCGcAUA-----GCUCAGGCUGuGGCGG- -5'
23135 3' -57.5 NC_005178.1 + 10804 0.66 0.489537
Target:  5'- uCGGGUGUcUCc-GUCCGGCcCaCGCCg -3'
miRNA:   3'- uGCCCGCAuAGcuCAGGCUGuG-GCGG- -5'
23135 3' -57.5 NC_005178.1 + 19667 0.67 0.46622
Target:  5'- cGCuGGCGUAcCGGGUCCaggagcacguccugGACcUCGCCg -3'
miRNA:   3'- -UGcCCGCAUaGCUCAGG--------------CUGuGGCGG- -5'
23135 3' -57.5 NC_005178.1 + 10589 0.67 0.459238
Target:  5'- aACcGGCcgagCGAG-CCGGCACCGCa -3'
miRNA:   3'- -UGcCCGcauaGCUCaGGCUGUGGCGg -5'
23135 3' -57.5 NC_005178.1 + 25163 0.67 0.459238
Target:  5'- uCGGGCacgGUUGAG-CCaAgGCCGCCg -3'
miRNA:   3'- uGCCCGca-UAGCUCaGGcUgUGGCGG- -5'
23135 3' -57.5 NC_005178.1 + 8962 0.67 0.449361
Target:  5'- uUGGGCGUGguagggauggCGGGgaaugCCGGCGaCGCCc -3'
miRNA:   3'- uGCCCGCAUa---------GCUCa----GGCUGUgGCGG- -5'
23135 3' -57.5 NC_005178.1 + 31127 0.67 0.439603
Target:  5'- aGCGGGUGUGUUuuGUCaucgCGGCGCgccuCGCCg -3'
miRNA:   3'- -UGCCCGCAUAGcuCAG----GCUGUG----GCGG- -5'
23135 3' -57.5 NC_005178.1 + 15036 0.67 0.436699
Target:  5'- gUGGGUuauuccuggGUGUCGuuGUCCGACGCggacggcucacccuCGCCg -3'
miRNA:   3'- uGCCCG---------CAUAGCu-CAGGCUGUG--------------GCGG- -5'
23135 3' -57.5 NC_005178.1 + 4535 0.68 0.429966
Target:  5'- -aGGaUGUAaagaUCGGGUCCGGCguGCCGCUc -3'
miRNA:   3'- ugCCcGCAU----AGCUCAGGCUG--UGGCGG- -5'
23135 3' -57.5 NC_005178.1 + 34229 0.68 0.420455
Target:  5'- uCGGGCuGUGcuUUGAauggaccagGUCCGACACguuCGCCa -3'
miRNA:   3'- uGCCCG-CAU--AGCU---------CAGGCUGUG---GCGG- -5'
23135 3' -57.5 NC_005178.1 + 31468 0.68 0.416686
Target:  5'- cCGGGUggugguagGUGUCGAGgggcggccaccccUCGGCACCGUCu -3'
miRNA:   3'- uGCCCG--------CAUAGCUCa------------GGCUGUGGCGG- -5'
23135 3' -57.5 NC_005178.1 + 14641 0.68 0.410141
Target:  5'- aGCGGGCGUgcagguggagAUCGAucuccgcGUCCG-CAUCGgCg -3'
miRNA:   3'- -UGCCCGCA----------UAGCU-------CAGGCuGUGGCgG- -5'
23135 3' -57.5 NC_005178.1 + 4531 0.68 0.40182
Target:  5'- cCGGccuGCccAUCGAGcCgGACGCCGCCc -3'
miRNA:   3'- uGCC---CGcaUAGCUCaGgCUGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.