miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23135 5' -52.6 NC_005178.1 + 22029 1.09 0.001196
Target:  5'- cUGGACACCACCAAGCCGGUAAAACCGu -3'
miRNA:   3'- -ACCUGUGGUGGUUCGGCCAUUUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 24565 0.85 0.060167
Target:  5'- cUGGACACCAgCAAGCCGGau--ACCGg -3'
miRNA:   3'- -ACCUGUGGUgGUUCGGCCauuuUGGC- -5'
23135 5' -52.6 NC_005178.1 + 27409 0.78 0.169568
Target:  5'- --aGCGCCugCAucAGCCGGUAGAGCUGg -3'
miRNA:   3'- accUGUGGugGU--UCGGCCAUUUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 2745 0.78 0.184638
Target:  5'- aGGugGCCACCAAGgCGGUcc-GCCa -3'
miRNA:   3'- aCCugUGGUGGUUCgGCCAuuuUGGc -5'
23135 5' -52.6 NC_005178.1 + 27877 0.76 0.250336
Target:  5'- aGGugACCGCCucGGCCGGcucggcGAAGCCa -3'
miRNA:   3'- aCCugUGGUGGu-UCGGCCa-----UUUUGGc -5'
23135 5' -52.6 NC_005178.1 + 9374 0.75 0.25718
Target:  5'- aGGGCGCCgGCCGAGgCGGaUAcAGCCGa -3'
miRNA:   3'- aCCUGUGG-UGGUUCgGCC-AUuUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 9421 0.75 0.271326
Target:  5'- cUGGGCGCCGCCA--UCGGUGccACCGc -3'
miRNA:   3'- -ACCUGUGGUGGUucGGCCAUuuUGGC- -5'
23135 5' -52.6 NC_005178.1 + 26154 0.75 0.278631
Target:  5'- aGGGCcgcaccgaucaGCCACCAGG-CGGgcAGACCGg -3'
miRNA:   3'- aCCUG-----------UGGUGGUUCgGCCauUUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 17032 0.75 0.278631
Target:  5'- cGGGCGCCcacuucGCCGGGUCGGgguuACCGg -3'
miRNA:   3'- aCCUGUGG------UGGUUCGGCCauuuUGGC- -5'
23135 5' -52.6 NC_005178.1 + 34105 0.75 0.278631
Target:  5'- aGGGCcgACUcgGCCAGGCCGGU-GGACCa -3'
miRNA:   3'- aCCUG--UGG--UGGUUCGGCCAuUUUGGc -5'
23135 5' -52.6 NC_005178.1 + 26624 0.74 0.309416
Target:  5'- aUGGACGCCuauaGCCAGGCaauggacgagCGGgcGAGCCa -3'
miRNA:   3'- -ACCUGUGG----UGGUUCG----------GCCauUUUGGc -5'
23135 5' -52.6 NC_005178.1 + 14445 0.74 0.325755
Target:  5'- aUGGGCGCCgggguGCCgGAGCUGGUcAGGGCCa -3'
miRNA:   3'- -ACCUGUGG-----UGG-UUCGGCCA-UUUUGGc -5'
23135 5' -52.6 NC_005178.1 + 5675 0.73 0.360326
Target:  5'- gGGAuaCACCACCGAGgCGGUcuGGCgGa -3'
miRNA:   3'- aCCU--GUGGUGGUUCgGCCAuuUUGgC- -5'
23135 5' -52.6 NC_005178.1 + 9665 0.73 0.378546
Target:  5'- cGGugGCUucGCCGAGCCGGccGAGgCGg -3'
miRNA:   3'- aCCugUGG--UGGUUCGGCCauUUUgGC- -5'
23135 5' -52.6 NC_005178.1 + 7470 0.73 0.378546
Target:  5'- aGGGCAUCACCcuGGCCuGGagcGAACCGa -3'
miRNA:   3'- aCCUGUGGUGGu-UCGG-CCau-UUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 1720 0.72 0.387885
Target:  5'- cGGAaaCGCCuccuaguucuucGCCAAGCCGG--AAACCGa -3'
miRNA:   3'- aCCU--GUGG------------UGGUUCGGCCauUUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 5279 0.72 0.387885
Target:  5'- aGGcCGCCACCGuucagGGCCGGcgcGAGCUGg -3'
miRNA:   3'- aCCuGUGGUGGU-----UCGGCCau-UUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 15075 0.72 0.407012
Target:  5'- aGGAguuccUGCgCACCGAGCUGGUGAAGCg- -3'
miRNA:   3'- aCCU-----GUG-GUGGUUCGGCCAUUUUGgc -5'
23135 5' -52.6 NC_005178.1 + 9128 0.72 0.416794
Target:  5'- uUGGAUA--GCCAGGCCGGUAu-GCUGu -3'
miRNA:   3'- -ACCUGUggUGGUUCGGCCAUuuUGGC- -5'
23135 5' -52.6 NC_005178.1 + 32225 0.72 0.416794
Target:  5'- -cGACGCCGCCcuGGGCCgccuGGUcGAGCCGa -3'
miRNA:   3'- acCUGUGGUGG--UUCGG----CCAuUUUGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.