Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23135 | 5' | -52.6 | NC_005178.1 | + | 22029 | 1.09 | 0.001196 |
Target: 5'- cUGGACACCACCAAGCCGGUAAAACCGu -3' miRNA: 3'- -ACCUGUGGUGGUUCGGCCAUUUUGGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 24565 | 0.85 | 0.060167 |
Target: 5'- cUGGACACCAgCAAGCCGGau--ACCGg -3' miRNA: 3'- -ACCUGUGGUgGUUCGGCCauuuUGGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 27409 | 0.78 | 0.169568 |
Target: 5'- --aGCGCCugCAucAGCCGGUAGAGCUGg -3' miRNA: 3'- accUGUGGugGU--UCGGCCAUUUUGGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 2745 | 0.78 | 0.184638 |
Target: 5'- aGGugGCCACCAAGgCGGUcc-GCCa -3' miRNA: 3'- aCCugUGGUGGUUCgGCCAuuuUGGc -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 27877 | 0.76 | 0.250336 |
Target: 5'- aGGugACCGCCucGGCCGGcucggcGAAGCCa -3' miRNA: 3'- aCCugUGGUGGu-UCGGCCa-----UUUUGGc -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 9374 | 0.75 | 0.25718 |
Target: 5'- aGGGCGCCgGCCGAGgCGGaUAcAGCCGa -3' miRNA: 3'- aCCUGUGG-UGGUUCgGCC-AUuUUGGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 9421 | 0.75 | 0.271326 |
Target: 5'- cUGGGCGCCGCCA--UCGGUGccACCGc -3' miRNA: 3'- -ACCUGUGGUGGUucGGCCAUuuUGGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 26154 | 0.75 | 0.278631 |
Target: 5'- aGGGCcgcaccgaucaGCCACCAGG-CGGgcAGACCGg -3' miRNA: 3'- aCCUG-----------UGGUGGUUCgGCCauUUUGGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 17032 | 0.75 | 0.278631 |
Target: 5'- cGGGCGCCcacuucGCCGGGUCGGgguuACCGg -3' miRNA: 3'- aCCUGUGG------UGGUUCGGCCauuuUGGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 34105 | 0.75 | 0.278631 |
Target: 5'- aGGGCcgACUcgGCCAGGCCGGU-GGACCa -3' miRNA: 3'- aCCUG--UGG--UGGUUCGGCCAuUUUGGc -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 26624 | 0.74 | 0.309416 |
Target: 5'- aUGGACGCCuauaGCCAGGCaauggacgagCGGgcGAGCCa -3' miRNA: 3'- -ACCUGUGG----UGGUUCG----------GCCauUUUGGc -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 14445 | 0.74 | 0.325755 |
Target: 5'- aUGGGCGCCgggguGCCgGAGCUGGUcAGGGCCa -3' miRNA: 3'- -ACCUGUGG-----UGG-UUCGGCCA-UUUUGGc -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 5675 | 0.73 | 0.360326 |
Target: 5'- gGGAuaCACCACCGAGgCGGUcuGGCgGa -3' miRNA: 3'- aCCU--GUGGUGGUUCgGCCAuuUUGgC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 9665 | 0.73 | 0.378546 |
Target: 5'- cGGugGCUucGCCGAGCCGGccGAGgCGg -3' miRNA: 3'- aCCugUGG--UGGUUCGGCCauUUUgGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 7470 | 0.73 | 0.378546 |
Target: 5'- aGGGCAUCACCcuGGCCuGGagcGAACCGa -3' miRNA: 3'- aCCUGUGGUGGu-UCGG-CCau-UUUGGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 1720 | 0.72 | 0.387885 |
Target: 5'- cGGAaaCGCCuccuaguucuucGCCAAGCCGG--AAACCGa -3' miRNA: 3'- aCCU--GUGG------------UGGUUCGGCCauUUUGGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 5279 | 0.72 | 0.387885 |
Target: 5'- aGGcCGCCACCGuucagGGCCGGcgcGAGCUGg -3' miRNA: 3'- aCCuGUGGUGGU-----UCGGCCau-UUUGGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 15075 | 0.72 | 0.407012 |
Target: 5'- aGGAguuccUGCgCACCGAGCUGGUGAAGCg- -3' miRNA: 3'- aCCU-----GUG-GUGGUUCGGCCAUUUUGgc -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 9128 | 0.72 | 0.416794 |
Target: 5'- uUGGAUA--GCCAGGCCGGUAu-GCUGu -3' miRNA: 3'- -ACCUGUggUGGUUCGGCCAUuuUGGC- -5' |
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23135 | 5' | -52.6 | NC_005178.1 | + | 32225 | 0.72 | 0.416794 |
Target: 5'- -cGACGCCGCCcuGGGCCgccuGGUcGAGCCGa -3' miRNA: 3'- acCUGUGGUGG--UUCGG----CCAuUUUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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