miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23135 5' -52.6 NC_005178.1 + 20499 0.68 0.635455
Target:  5'- aGGuCGCCGCCc--CCGGUAAccCCGa -3'
miRNA:   3'- aCCuGUGGUGGuucGGCCAUUuuGGC- -5'
23135 5' -52.6 NC_005178.1 + 7700 0.7 0.521762
Target:  5'- cGGACAgaUCACCGagcgcuauucggAGCCGGccgAAGACCu -3'
miRNA:   3'- aCCUGU--GGUGGU------------UCGGCCa--UUUUGGc -5'
23135 5' -52.6 NC_005178.1 + 15603 0.7 0.521762
Target:  5'- gGGGCACCuCCAGGCUcaGGccGAGCUGu -3'
miRNA:   3'- aCCUGUGGuGGUUCGG--CCauUUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 10355 0.7 0.532861
Target:  5'- cGGGCugCgcugGCCGAGCUGGUGGGcAgCGa -3'
miRNA:   3'- aCCUGugG----UGGUUCGGCCAUUU-UgGC- -5'
23135 5' -52.6 NC_005178.1 + 21971 0.7 0.532861
Target:  5'- -cGGCACUGCUGAGCUGGUAGugGACgGg -3'
miRNA:   3'- acCUGUGGUGGUUCGGCCAUU--UUGgC- -5'
23135 5' -52.6 NC_005178.1 + 2903 0.69 0.544043
Target:  5'- cUGGACAUggcgCGCCucGGCCaGGUcGAGCCGc -3'
miRNA:   3'- -ACCUGUG----GUGGu-UCGG-CCAuUUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 34837 0.69 0.566624
Target:  5'- gUGGcgccgcCACCACCGGGCUGGauuccgcccGACCGg -3'
miRNA:   3'- -ACCu-----GUGGUGGUUCGGCCauu------UUGGC- -5'
23135 5' -52.6 NC_005178.1 + 23462 0.68 0.621623
Target:  5'- aGGGCGCCcggcGCgAAGCCGGcccgcugcucGGCCGg -3'
miRNA:   3'- aCCUGUGG----UGgUUCGGCCauu-------UUGGC- -5'
23135 5' -52.6 NC_005178.1 + 5990 0.68 0.635455
Target:  5'- gGGGCGCUGCCccAGGCUGGcgugucgGAuACCGa -3'
miRNA:   3'- aCCUGUGGUGG--UUCGGCCa------UUuUGGC- -5'
23135 5' -52.6 NC_005178.1 + 19888 0.7 0.48904
Target:  5'- aUGGGCGCCcuauggauguGCCGGGCUGGcGGAucgauGCCGc -3'
miRNA:   3'- -ACCUGUGG----------UGGUUCGGCCaUUU-----UGGC- -5'
23135 5' -52.6 NC_005178.1 + 20399 0.72 0.430728
Target:  5'- cUGGACGCCcaggcgaccaaccugGCCAAGCUGcGcGAAACCc -3'
miRNA:   3'- -ACCUGUGG---------------UGGUUCGGC-CaUUUUGGc -5'
23135 5' -52.6 NC_005178.1 + 32225 0.72 0.416794
Target:  5'- -cGACGCCGCCcuGGGCCgccuGGUcGAGCCGa -3'
miRNA:   3'- acCUGUGGUGG--UUCGG----CCAuUUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 24565 0.85 0.060167
Target:  5'- cUGGACACCAgCAAGCCGGau--ACCGg -3'
miRNA:   3'- -ACCUGUGGUgGUUCGGCCauuuUGGC- -5'
23135 5' -52.6 NC_005178.1 + 2745 0.78 0.184638
Target:  5'- aGGugGCCACCAAGgCGGUcc-GCCa -3'
miRNA:   3'- aCCugUGGUGGUUCgGCCAuuuUGGc -5'
23135 5' -52.6 NC_005178.1 + 26624 0.74 0.309416
Target:  5'- aUGGACGCCuauaGCCAGGCaauggacgagCGGgcGAGCCa -3'
miRNA:   3'- -ACCUGUGG----UGGUUCG----------GCCauUUUGGc -5'
23135 5' -52.6 NC_005178.1 + 5675 0.73 0.360326
Target:  5'- gGGAuaCACCACCGAGgCGGUcuGGCgGa -3'
miRNA:   3'- aCCU--GUGGUGGUUCgGCCAuuUUGgC- -5'
23135 5' -52.6 NC_005178.1 + 7470 0.73 0.378546
Target:  5'- aGGGCAUCACCcuGGCCuGGagcGAACCGa -3'
miRNA:   3'- aCCUGUGGUGGu-UCGG-CCau-UUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 9665 0.73 0.378546
Target:  5'- cGGugGCUucGCCGAGCCGGccGAGgCGg -3'
miRNA:   3'- aCCugUGG--UGGUUCGGCCauUUUgGC- -5'
23135 5' -52.6 NC_005178.1 + 5279 0.72 0.387885
Target:  5'- aGGcCGCCACCGuucagGGCCGGcgcGAGCUGg -3'
miRNA:   3'- aCCuGUGGUGGU-----UCGGCCau-UUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 15075 0.72 0.407012
Target:  5'- aGGAguuccUGCgCACCGAGCUGGUGAAGCg- -3'
miRNA:   3'- aCCU-----GUG-GUGGUUCGGCCAUUUUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.