miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23135 5' -52.6 NC_005178.1 + 1720 0.72 0.387885
Target:  5'- cGGAaaCGCCuccuaguucuucGCCAAGCCGG--AAACCGa -3'
miRNA:   3'- aCCU--GUGG------------UGGUUCGGCCauUUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 1847 0.66 0.768955
Target:  5'- cGGACcauCCGCCAuguccucGGCCagcGGaUAGGACCa -3'
miRNA:   3'- aCCUGu--GGUGGU-------UCGG---CC-AUUUUGGc -5'
23135 5' -52.6 NC_005178.1 + 2142 0.7 0.521762
Target:  5'- cGGugGCgGCCAGcGCCGGg---GCCa -3'
miRNA:   3'- aCCugUGgUGGUU-CGGCCauuuUGGc -5'
23135 5' -52.6 NC_005178.1 + 2482 0.66 0.737596
Target:  5'- cGGGCACCAgUc-GCCGGUu---CCGc -3'
miRNA:   3'- aCCUGUGGUgGuuCGGCCAuuuuGGC- -5'
23135 5' -52.6 NC_005178.1 + 2724 0.72 0.426719
Target:  5'- gUGGugGCggCGCCAcGCCGGUugucGCCGg -3'
miRNA:   3'- -ACCugUG--GUGGUuCGGCCAuuu-UGGC- -5'
23135 5' -52.6 NC_005178.1 + 2745 0.78 0.184638
Target:  5'- aGGugGCCACCAAGgCGGUcc-GCCa -3'
miRNA:   3'- aCCugUGGUGGUUCgGCCAuuuUGGc -5'
23135 5' -52.6 NC_005178.1 + 2903 0.69 0.544043
Target:  5'- cUGGACAUggcgCGCCucGGCCaGGUcGAGCCGc -3'
miRNA:   3'- -ACCUGUG----GUGGu-UCGG-CCAuUUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 3721 0.67 0.669969
Target:  5'- aUGGAcCGCCagGCCAAGCUGGcc--ACCu -3'
miRNA:   3'- -ACCU-GUGG--UGGUUCGGCCauuuUGGc -5'
23135 5' -52.6 NC_005178.1 + 4532 0.66 0.759347
Target:  5'- cGGccuGC-CCAUCGAGCCGGac--GCCGc -3'
miRNA:   3'- aCC---UGuGGUGGUUCGGCCauuuUGGC- -5'
23135 5' -52.6 NC_005178.1 + 4886 0.67 0.70413
Target:  5'- aUGGGCAUCA---AGCCGGccGGGACCa -3'
miRNA:   3'- -ACCUGUGGUgguUCGGCCa-UUUUGGc -5'
23135 5' -52.6 NC_005178.1 + 4979 0.66 0.737596
Target:  5'- aUGGAcCACCugucGCCGcuGGCCaGGUcGAGCUGa -3'
miRNA:   3'- -ACCU-GUGG----UGGU--UCGG-CCAuUUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 5150 0.66 0.737596
Target:  5'- aGGACGCCcgcaACCuggcGCCGGUcuacAGCCc -3'
miRNA:   3'- aCCUGUGG----UGGuu--CGGCCAuu--UUGGc -5'
23135 5' -52.6 NC_005178.1 + 5279 0.72 0.387885
Target:  5'- aGGcCGCCACCGuucagGGCCGGcgcGAGCUGg -3'
miRNA:   3'- aCCuGUGGUGGU-----UCGGCCau-UUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 5675 0.73 0.360326
Target:  5'- gGGAuaCACCACCGAGgCGGUcuGGCgGa -3'
miRNA:   3'- aCCU--GUGGUGGUUCgGCCAuuUUGgC- -5'
23135 5' -52.6 NC_005178.1 + 5990 0.68 0.635455
Target:  5'- gGGGCGCUGCCccAGGCUGGcgugucgGAuACCGa -3'
miRNA:   3'- aCCUGUGGUGG--UUCGGCCa------UUuUGGC- -5'
23135 5' -52.6 NC_005178.1 + 7470 0.73 0.378546
Target:  5'- aGGGCAUCACCcuGGCCuGGagcGAACCGa -3'
miRNA:   3'- aCCUGUGGUGGu-UCGG-CCau-UUUGGC- -5'
23135 5' -52.6 NC_005178.1 + 7587 0.67 0.669969
Target:  5'- cGGGCugCgcguuccacGCCAGGCCGuuaucgaaccccGUAuuGCCGg -3'
miRNA:   3'- aCCUGugG---------UGGUUCGGC------------CAUuuUGGC- -5'
23135 5' -52.6 NC_005178.1 + 7700 0.7 0.521762
Target:  5'- cGGACAgaUCACCGagcgcuauucggAGCCGGccgAAGACCu -3'
miRNA:   3'- aCCUGU--GGUGGU------------UCGGCCa--UUUUGGc -5'
23135 5' -52.6 NC_005178.1 + 8142 0.67 0.681412
Target:  5'- aGGGCGCCAUCGAgaucGCCcGUGGggacGACCa -3'
miRNA:   3'- aCCUGUGGUGGUU----CGGcCAUU----UUGGc -5'
23135 5' -52.6 NC_005178.1 + 8828 0.66 0.757196
Target:  5'- aUGGuCGCCGCCcuuGCCGGcccacaugucGGCCGc -3'
miRNA:   3'- -ACCuGUGGUGGuu-CGGCCauu-------UUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.