miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23137 3' -53.7 NC_005178.1 + 22622 1.09 0.00094
Target:  5'- gUCAACUGACCAUCGCCGCGCAGAACGc -3'
miRNA:   3'- -AGUUGACUGGUAGCGGCGCGUCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 10198 0.76 0.204623
Target:  5'- -uGGCUGAUCAguUCGCCGCGCuGcGCGa -3'
miRNA:   3'- agUUGACUGGU--AGCGGCGCGuCuUGC- -5'
23137 3' -53.7 NC_005178.1 + 21191 0.76 0.210344
Target:  5'- aCGACcaGACCGUCGCCGC-CAcGGACGg -3'
miRNA:   3'- aGUUGa-CUGGUAGCGGCGcGU-CUUGC- -5'
23137 3' -53.7 NC_005178.1 + 31695 0.73 0.313539
Target:  5'- cCGGCUGACCGauaCCGCGCAGucuGCGc -3'
miRNA:   3'- aGUUGACUGGUagcGGCGCGUCu--UGC- -5'
23137 3' -53.7 NC_005178.1 + 28546 0.72 0.346847
Target:  5'- -gGGCgggGGCCGUcCGCCGCGCcaccgGGGGCGu -3'
miRNA:   3'- agUUGa--CUGGUA-GCGGCGCG-----UCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 6728 0.71 0.401391
Target:  5'- cCGGCUGAUg--CGCCGCGUAG-ACGc -3'
miRNA:   3'- aGUUGACUGguaGCGGCGCGUCuUGC- -5'
23137 3' -53.7 NC_005178.1 + 36430 0.7 0.440656
Target:  5'- gUUGGCgGGCUAUUGCCGCGguGGAa- -3'
miRNA:   3'- -AGUUGaCUGGUAGCGGCGCguCUUgc -5'
23137 3' -53.7 NC_005178.1 + 24402 0.7 0.471491
Target:  5'- gCAGCcGACCGUUGCCcuGCGCuauaAGGGCa -3'
miRNA:   3'- aGUUGaCUGGUAGCGG--CGCG----UCUUGc -5'
23137 3' -53.7 NC_005178.1 + 34990 0.69 0.492644
Target:  5'- --cGCUGGCCGaggCGCCGaccagccuguCGCAGAGCu -3'
miRNA:   3'- aguUGACUGGUa--GCGGC----------GCGUCUUGc -5'
23137 3' -53.7 NC_005178.1 + 28947 0.69 0.503383
Target:  5'- cCGGCacGGCCAUCGCCGUGCGc---- -3'
miRNA:   3'- aGUUGa-CUGGUAGCGGCGCGUcuugc -5'
23137 3' -53.7 NC_005178.1 + 11215 0.69 0.503383
Target:  5'- cCGGCUGuucugcACCAUCGUCGCGUccAGCGu -3'
miRNA:   3'- aGUUGAC------UGGUAGCGGCGCGucUUGC- -5'
23137 3' -53.7 NC_005178.1 + 19907 0.69 0.514222
Target:  5'- gUCAcCUGGCCGgucUUGCCGgCGCuGGACu -3'
miRNA:   3'- -AGUuGACUGGU---AGCGGC-GCGuCUUGc -5'
23137 3' -53.7 NC_005178.1 + 24514 0.69 0.525156
Target:  5'- aUCAGCgacgGcaacACCGUCGCCGguaUGCAGAucaGCGg -3'
miRNA:   3'- -AGUUGa---C----UGGUAGCGGC---GCGUCU---UGC- -5'
23137 3' -53.7 NC_005178.1 + 3647 0.69 0.525156
Target:  5'- --cGCcGAgCAUCGCCGCcaggcgcgGCAGGACGc -3'
miRNA:   3'- aguUGaCUgGUAGCGGCG--------CGUCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 15705 0.69 0.536176
Target:  5'- -gGACUgGACCAUcgagcCGCCGCGCA--ACGc -3'
miRNA:   3'- agUUGA-CUGGUA-----GCGGCGCGUcuUGC- -5'
23137 3' -53.7 NC_005178.1 + 11375 0.69 0.536176
Target:  5'- gCAGC-GGCCAcCGCCGCGCcGAugAUGa -3'
miRNA:   3'- aGUUGaCUGGUaGCGGCGCGuCU--UGC- -5'
23137 3' -53.7 NC_005178.1 + 24773 0.69 0.540607
Target:  5'- -gGACUG-CCGgucgaggacguaggCGCgGCGCAGGGCGu -3'
miRNA:   3'- agUUGACuGGUa-------------GCGgCGCGUCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 13259 0.68 0.562935
Target:  5'- cCAGCaguugGACC-UCGCCGUaggcgccaucggcucGCAGGGCGu -3'
miRNA:   3'- aGUUGa----CUGGuAGCGGCG---------------CGUCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 29659 0.67 0.602542
Target:  5'- gUAGCUccagGACCGcaucggCGCCGCGCAcagucacGGACGg -3'
miRNA:   3'- aGUUGA----CUGGUa-----GCGGCGCGU-------CUUGC- -5'
23137 3' -53.7 NC_005178.1 + 17661 0.67 0.60368
Target:  5'- cCAGgUGACCGUCGagacggGCGUAGAcaaGCGg -3'
miRNA:   3'- aGUUgACUGGUAGCgg----CGCGUCU---UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.