miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23137 3' -53.7 NC_005178.1 + 7349 0.66 0.694693
Target:  5'- cCGACagaggggcgcgUGACCAUCGCCGC--AGAugACGc -3'
miRNA:   3'- aGUUG-----------ACUGGUAGCGGCGcgUCU--UGC- -5'
23137 3' -53.7 NC_005178.1 + 22885 0.67 0.615079
Target:  5'- -----aGGCUAUCGCCGaUGCGGAcGCGg -3'
miRNA:   3'- aguugaCUGGUAGCGGC-GCGUCU-UGC- -5'
23137 3' -53.7 NC_005178.1 + 26303 0.67 0.626493
Target:  5'- gCAACUGuccGCCAUgGCgGCGUcacucgccAGGGCGa -3'
miRNA:   3'- aGUUGAC---UGGUAgCGgCGCG--------UCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 17610 0.67 0.626493
Target:  5'- --cGCUGugCGUCGCCGUgGUcuGACGg -3'
miRNA:   3'- aguUGACugGUAGCGGCG-CGucUUGC- -5'
23137 3' -53.7 NC_005178.1 + 14619 0.67 0.63677
Target:  5'- cUCAACUcgGACgAcgaaggggUCGCCGCGCuggaguucuaccaGGAGCGc -3'
miRNA:   3'- -AGUUGA--CUGgU--------AGCGGCGCG-------------UCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 2692 0.67 0.637912
Target:  5'- uUCGGCccUGccgaaggaaACCcgCGCCGCGCugcuGAACGc -3'
miRNA:   3'- -AGUUG--AC---------UGGuaGCGGCGCGu---CUUGC- -5'
23137 3' -53.7 NC_005178.1 + 25052 0.67 0.649326
Target:  5'- uUCGcCUG-CC-UCGUCGCaGCAGGACa -3'
miRNA:   3'- -AGUuGACuGGuAGCGGCG-CGUCUUGc -5'
23137 3' -53.7 NC_005178.1 + 27469 0.67 0.660723
Target:  5'- aUCAGCcugGACCAgaagaUCGCCGagGCcaGGAACa -3'
miRNA:   3'- -AGUUGa--CUGGU-----AGCGGCg-CG--UCUUGc -5'
23137 3' -53.7 NC_005178.1 + 3848 0.66 0.683419
Target:  5'- aCGACcGGCCGcacagcagcUUGCCGCGCAucguugacccGAACa -3'
miRNA:   3'- aGUUGaCUGGU---------AGCGGCGCGU----------CUUGc -5'
23137 3' -53.7 NC_005178.1 + 20730 0.67 0.60368
Target:  5'- -----aGcCCAUCGCCGCccugacccaacaGCAGAGCGc -3'
miRNA:   3'- aguugaCuGGUAGCGGCG------------CGUCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 17661 0.67 0.60368
Target:  5'- cCAGgUGACCGUCGagacggGCGUAGAcaaGCGg -3'
miRNA:   3'- aGUUgACUGGUAGCgg----CGCGUCU---UGC- -5'
23137 3' -53.7 NC_005178.1 + 15705 0.69 0.536176
Target:  5'- -gGACUgGACCAUcgagcCGCCGCGCA--ACGc -3'
miRNA:   3'- agUUGA-CUGGUA-----GCGGCGCGUcuUGC- -5'
23137 3' -53.7 NC_005178.1 + 21191 0.76 0.210344
Target:  5'- aCGACcaGACCGUCGCCGC-CAcGGACGg -3'
miRNA:   3'- aGUUGa-CUGGUAGCGGCGcGU-CUUGC- -5'
23137 3' -53.7 NC_005178.1 + 31695 0.73 0.313539
Target:  5'- cCGGCUGACCGauaCCGCGCAGucuGCGc -3'
miRNA:   3'- aGUUGACUGGUagcGGCGCGUCu--UGC- -5'
23137 3' -53.7 NC_005178.1 + 28546 0.72 0.346847
Target:  5'- -gGGCgggGGCCGUcCGCCGCGCcaccgGGGGCGu -3'
miRNA:   3'- agUUGa--CUGGUA-GCGGCGCG-----UCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 24402 0.7 0.471491
Target:  5'- gCAGCcGACCGUUGCCcuGCGCuauaAGGGCa -3'
miRNA:   3'- aGUUGaCUGGUAGCGG--CGCG----UCUUGc -5'
23137 3' -53.7 NC_005178.1 + 34990 0.69 0.492644
Target:  5'- --cGCUGGCCGaggCGCCGaccagccuguCGCAGAGCu -3'
miRNA:   3'- aguUGACUGGUa--GCGGC----------GCGUCUUGc -5'
23137 3' -53.7 NC_005178.1 + 11215 0.69 0.503383
Target:  5'- cCGGCUGuucugcACCAUCGUCGCGUccAGCGu -3'
miRNA:   3'- aGUUGAC------UGGUAGCGGCGCGucUUGC- -5'
23137 3' -53.7 NC_005178.1 + 28947 0.69 0.503383
Target:  5'- cCGGCacGGCCAUCGCCGUGCGc---- -3'
miRNA:   3'- aGUUGa-CUGGUAGCGGCGCGUcuugc -5'
23137 3' -53.7 NC_005178.1 + 24514 0.69 0.525156
Target:  5'- aUCAGCgacgGcaacACCGUCGCCGguaUGCAGAucaGCGg -3'
miRNA:   3'- -AGUUGa---C----UGGUAGCGGC---GCGUCU---UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.