miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23137 3' -53.7 NC_005178.1 + 1781 0.67 0.63106
Target:  5'- gUCGuGCUGcugccaagaguugauGCCGUCGCggacacUGCGCAGGACa -3'
miRNA:   3'- -AGU-UGAC---------------UGGUAGCG------GCGCGUCUUGc -5'
23137 3' -53.7 NC_005178.1 + 2692 0.67 0.637912
Target:  5'- uUCGGCccUGccgaaggaaACCcgCGCCGCGCugcuGAACGc -3'
miRNA:   3'- -AGUUG--AC---------UGGuaGCGGCGCGu---CUUGC- -5'
23137 3' -53.7 NC_005178.1 + 3647 0.69 0.525156
Target:  5'- --cGCcGAgCAUCGCCGCcaggcgcgGCAGGACGc -3'
miRNA:   3'- aguUGaCUgGUAGCGGCG--------CGUCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 3848 0.66 0.683419
Target:  5'- aCGACcGGCCGcacagcagcUUGCCGCGCAucguugacccGAACa -3'
miRNA:   3'- aGUUGaCUGGU---------AGCGGCGCGU----------CUUGc -5'
23137 3' -53.7 NC_005178.1 + 5318 0.67 0.626493
Target:  5'- gUCGGCUcGACCAg-GCgGCcCAGGGCGg -3'
miRNA:   3'- -AGUUGA-CUGGUagCGgCGcGUCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 6728 0.71 0.401391
Target:  5'- cCGGCUGAUg--CGCCGCGUAG-ACGc -3'
miRNA:   3'- aGUUGACUGguaGCGGCGCGUCuUGC- -5'
23137 3' -53.7 NC_005178.1 + 7349 0.66 0.694693
Target:  5'- cCGACagaggggcgcgUGACCAUCGCCGC--AGAugACGc -3'
miRNA:   3'- aGUUG-----------ACUGGUAGCGGCGcgUCU--UGC- -5'
23137 3' -53.7 NC_005178.1 + 9578 0.66 0.694693
Target:  5'- ---cCUGcGCCG-CGCUGCGCuGGGCGg -3'
miRNA:   3'- aguuGAC-UGGUaGCGGCGCGuCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 10198 0.76 0.204623
Target:  5'- -uGGCUGAUCAguUCGCCGCGCuGcGCGa -3'
miRNA:   3'- agUUGACUGGU--AGCGGCGCGuCuUGC- -5'
23137 3' -53.7 NC_005178.1 + 11215 0.69 0.503383
Target:  5'- cCGGCUGuucugcACCAUCGUCGCGUccAGCGu -3'
miRNA:   3'- aGUUGAC------UGGUAGCGGCGCGucUUGC- -5'
23137 3' -53.7 NC_005178.1 + 11375 0.69 0.536176
Target:  5'- gCAGC-GGCCAcCGCCGCGCcGAugAUGa -3'
miRNA:   3'- aGUUGaCUGGUaGCGGCGCGuCU--UGC- -5'
23137 3' -53.7 NC_005178.1 + 13259 0.68 0.562935
Target:  5'- cCAGCaguugGACC-UCGCCGUaggcgccaucggcucGCAGGGCGu -3'
miRNA:   3'- aGUUGa----CUGGuAGCGGCG---------------CGUCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 14111 0.67 0.615079
Target:  5'- ---cCUGGCCGUCGCCcugggcgucgGCGUAGuACa -3'
miRNA:   3'- aguuGACUGGUAGCGG----------CGCGUCuUGc -5'
23137 3' -53.7 NC_005178.1 + 14619 0.67 0.63677
Target:  5'- cUCAACUcgGACgAcgaaggggUCGCCGCGCuggaguucuaccaGGAGCGc -3'
miRNA:   3'- -AGUUGA--CUGgU--------AGCGGCGCG-------------UCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 15705 0.69 0.536176
Target:  5'- -gGACUgGACCAUcgagcCGCCGCGCA--ACGc -3'
miRNA:   3'- agUUGA-CUGGUA-----GCGGCGCGUcuUGC- -5'
23137 3' -53.7 NC_005178.1 + 17610 0.67 0.626493
Target:  5'- --cGCUGugCGUCGCCGUgGUcuGACGg -3'
miRNA:   3'- aguUGACugGUAGCGGCG-CGucUUGC- -5'
23137 3' -53.7 NC_005178.1 + 17661 0.67 0.60368
Target:  5'- cCAGgUGACCGUCGagacggGCGUAGAcaaGCGg -3'
miRNA:   3'- aGUUgACUGGUAGCgg----CGCGUCU---UGC- -5'
23137 3' -53.7 NC_005178.1 + 19907 0.69 0.514222
Target:  5'- gUCAcCUGGCCGgucUUGCCGgCGCuGGACu -3'
miRNA:   3'- -AGUuGACUGGU---AGCGGC-GCGuCUUGc -5'
23137 3' -53.7 NC_005178.1 + 20730 0.67 0.60368
Target:  5'- -----aGcCCAUCGCCGCccugacccaacaGCAGAGCGc -3'
miRNA:   3'- aguugaCuGGUAGCGGCG------------CGUCUUGC- -5'
23137 3' -53.7 NC_005178.1 + 21191 0.76 0.210344
Target:  5'- aCGACcaGACCGUCGCCGC-CAcGGACGg -3'
miRNA:   3'- aGUUGa-CUGGUAGCGGCGcGU-CUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.