miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23140 5' -53.1 NC_005178.1 + 29819 0.66 0.72747
Target:  5'- aGCUGCG-CGUUcacgccgaaacccuuGGCUgGGUCACCGAc -3'
miRNA:   3'- aCGACGCgGCAG---------------UUGA-CUAGUGGUUc -5'
23140 5' -53.1 NC_005178.1 + 31913 0.66 0.721874
Target:  5'- cGCUGC-CgGUCAucggccaucGCUGAUCggcauggGCCGAGc -3'
miRNA:   3'- aCGACGcGgCAGU---------UGACUAG-------UGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 35109 0.66 0.687836
Target:  5'- cUGuCUGCuGCCGUUgaaGACUGAagcgaggUCGCCAu- -3'
miRNA:   3'- -AC-GACG-CGGCAG---UUGACU-------AGUGGUuc -5'
23140 5' -53.1 NC_005178.1 + 35419 0.66 0.687836
Target:  5'- cGCUG-GCCGcCAccgacagccugacGCUGAccgggCGCCAAGg -3'
miRNA:   3'- aCGACgCGGCaGU-------------UGACUa----GUGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 2489 0.66 0.676353
Target:  5'- cUGCUGCGCuCGcccUCGGuaacgccCUGAUCGCCc-- -3'
miRNA:   3'- -ACGACGCG-GC---AGUU-------GACUAGUGGuuc -5'
23140 5' -53.1 NC_005178.1 + 11685 0.67 0.665979
Target:  5'- gGcCUGCGCacCGUCGaaucGCUGAUCGCUc-- -3'
miRNA:   3'- aC-GACGCG--GCAGU----UGACUAGUGGuuc -5'
23140 5' -53.1 NC_005178.1 + 9835 0.67 0.665979
Target:  5'- cUGCUGCGCgaaucgguCGUCAaggcugccacGCUGAUCgaaCAAGc -3'
miRNA:   3'- -ACGACGCG--------GCAGU----------UGACUAGug-GUUC- -5'
23140 5' -53.1 NC_005178.1 + 14450 0.67 0.665979
Target:  5'- cGCcgggGUGCCGg-AGCUGGUCaggGCCAGGc -3'
miRNA:   3'- aCGa---CGCGGCagUUGACUAG---UGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 25709 0.67 0.655577
Target:  5'- cUGCUGC-CCGUUuuCgugccgaaugaucgcGGUCACCAGGg -3'
miRNA:   3'- -ACGACGcGGCAGuuGa--------------CUAGUGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 8546 0.67 0.619651
Target:  5'- gGUagUGCGCCccaGUCAAUUGGUCaugccgcagGCCGAGc -3'
miRNA:   3'- aCG--ACGCGG---CAGUUGACUAG---------UGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 18862 0.67 0.619651
Target:  5'- aGCUG-GCCGUUu-CUGAggACCGGGa -3'
miRNA:   3'- aCGACgCGGCAGuuGACUagUGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 23542 0.67 0.608071
Target:  5'- gUGCUG-GCCGUCcGGgUGGUcCACCAGc -3'
miRNA:   3'- -ACGACgCGGCAG-UUgACUA-GUGGUUc -5'
23140 5' -53.1 NC_005178.1 + 25170 0.67 0.608071
Target:  5'- aGCUGaugGCgGUCAACcaUGGcuUCGCCGGGg -3'
miRNA:   3'- aCGACg--CGgCAGUUG--ACU--AGUGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 9587 0.67 0.608071
Target:  5'- cGCUGCGCUGg--GC-GGUCGCCGc- -3'
miRNA:   3'- aCGACGCGGCaguUGaCUAGUGGUuc -5'
23140 5' -53.1 NC_005178.1 + 14932 0.68 0.58499
Target:  5'- cUGCgcgGCGauggucaGUUGACUGAUgGCCAGGg -3'
miRNA:   3'- -ACGa--CGCgg-----CAGUUGACUAgUGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 10357 0.68 0.58499
Target:  5'- gGCUGCGCUGgccgAGCUGGUgggcagcgaCAUCGAGg -3'
miRNA:   3'- aCGACGCGGCag--UUGACUA---------GUGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 16611 0.68 0.562083
Target:  5'- gGCguccagGUGCCgGUCAACUGGgu-CCAGGa -3'
miRNA:   3'- aCGa-----CGCGG-CAGUUGACUaguGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 16742 0.68 0.550719
Target:  5'- cGCUGCGCUGgccCAGgUGAUUggACCAc- -3'
miRNA:   3'- aCGACGCGGCa--GUUgACUAG--UGGUuc -5'
23140 5' -53.1 NC_005178.1 + 9337 0.68 0.549587
Target:  5'- gGCgGCGCCGcUCAGgaGcgugccgccagcaGUCGCCAGGg -3'
miRNA:   3'- aCGaCGCGGC-AGUUgaC-------------UAGUGGUUC- -5'
23140 5' -53.1 NC_005178.1 + 16758 0.69 0.528214
Target:  5'- cGCgaggGCGgccUCGUcCAGCUGGUCaACCGAGg -3'
miRNA:   3'- aCGa---CGC---GGCA-GUUGACUAG-UGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.