Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23142 | 3' | -65.7 | NC_005178.1 | + | 17459 | 0.69 | 0.093867 |
Target: 5'- cGCGGCGCGGGCGGUguauUCGacaCGCCCC-Ca -3' miRNA: 3'- -UGUCGCGCUCGUCG----GGCc--GCGGGGaG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 29545 | 0.69 | 0.093867 |
Target: 5'- cCGGUGUcaGGGuCAGcCCCGGCaGCCCCUg -3' miRNA: 3'- uGUCGCG--CUC-GUC-GGGCCG-CGGGGAg -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 20208 | 0.69 | 0.093867 |
Target: 5'- cCGGCGCGGGCugccgAGCUgGGCGa-CCUCg -3' miRNA: 3'- uGUCGCGCUCG-----UCGGgCCGCggGGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 34839 | 0.7 | 0.08637 |
Target: 5'- gGCGGCGUucAGCAGCgCGGCGCggguuuCCUUCg -3' miRNA: 3'- -UGUCGCGc-UCGUCGgGCCGCG------GGGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 26404 | 0.7 | 0.08637 |
Target: 5'- cCAGgGCG-GCGGCCagGGCGCCCg-- -3' miRNA: 3'- uGUCgCGCuCGUCGGg-CCGCGGGgag -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 15409 | 0.7 | 0.075127 |
Target: 5'- aGCAGCGCGGGCu--UCGGCGCCgaaCUUCa -3' miRNA: 3'- -UGUCGCGCUCGucgGGCCGCGG---GGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 20665 | 0.72 | 0.053591 |
Target: 5'- -gGGCGcCGAGCAGCUCGGCcucGCUaCCUCc -3' miRNA: 3'- ugUCGC-GCUCGUCGGGCCG---CGG-GGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 27199 | 0.74 | 0.041386 |
Target: 5'- cCAGCuCGGccagcGCAGCCCGGCgcgcuucGCCCCUCc -3' miRNA: 3'- uGUCGcGCU-----CGUCGGGCCG-------CGGGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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