miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23142 3' -65.7 NC_005178.1 + 16833 0.68 0.126598
Target:  5'- gGCGGCGaUGGGCuuGGCCUGGCccagguaGCUCUUCa -3'
miRNA:   3'- -UGUCGC-GCUCG--UCGGGCCG-------CGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 6237 0.67 0.130435
Target:  5'- cCGGCGCGGcGCcaggcgcauAGCCCGGCGCUg--- -3'
miRNA:   3'- uGUCGCGCU-CG---------UCGGGCCGCGGggag -5'
23142 3' -65.7 NC_005178.1 + 10138 0.67 0.134016
Target:  5'- cGCAGCGCcuccAGC-GCCUGGauuucCCCCUCa -3'
miRNA:   3'- -UGUCGCGc---UCGuCGGGCCgc---GGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 30649 0.67 0.137316
Target:  5'- uCAGCgGCGAGCAGCUggacgaagacgggCGGacgcuCGCCCCa- -3'
miRNA:   3'- uGUCG-CGCUCGUCGG-------------GCC-----GCGGGGag -5'
23142 3' -65.7 NC_005178.1 + 402 0.67 0.141451
Target:  5'- uCGGUGCGAuaGGCCUGGCggcguaGCUCCUg -3'
miRNA:   3'- uGUCGCGCUcgUCGGGCCG------CGGGGAg -5'
23142 3' -65.7 NC_005178.1 + 35643 0.66 0.153312
Target:  5'- uCAaCGUGAGCcucGGCCUGGCGauaCUCCUCa -3'
miRNA:   3'- uGUcGCGCUCG---UCGGGCCGC---GGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 19190 0.66 0.157462
Target:  5'- uACAGcCGCGuagaguGCcGCCaGGCGCUCCUg -3'
miRNA:   3'- -UGUC-GCGCu-----CGuCGGgCCGCGGGGAg -5'
23142 3' -65.7 NC_005178.1 + 33857 0.66 0.157462
Target:  5'- uCGGCGcCGAuGUAGCCgGGCaGUUCCUUg -3'
miRNA:   3'- uGUCGC-GCU-CGUCGGgCCG-CGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 28815 0.66 0.170077
Target:  5'- cACGGCaaggGCGaAGUAGCCCucgccugGGUGUUCCUCc -3'
miRNA:   3'- -UGUCG----CGC-UCGUCGGG-------CCGCGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 21944 0.66 0.170528
Target:  5'- aACAGCuCG-GCcuAGCCUggaGGUGCCCCUg -3'
miRNA:   3'- -UGUCGcGCuCG--UCGGG---CCGCGGGGAg -5'
23142 3' -65.7 NC_005178.1 + 9394 0.66 0.179769
Target:  5'- uACAGC-CGAGgcgccgaccguCAGCCCcugGGCGCCgCCaUCg -3'
miRNA:   3'- -UGUCGcGCUC-----------GUCGGG---CCGCGG-GG-AG- -5'
23142 3' -65.7 NC_005178.1 + 18138 0.66 0.179769
Target:  5'- -aGGC-CGAGCAGCUCGGCugcGCgCCg- -3'
miRNA:   3'- ugUCGcGCUCGUCGGGCCG---CGgGGag -5'
23142 3' -65.7 NC_005178.1 + 33016 0.66 0.179769
Target:  5'- gGCGGCGUccggcucgauGGGCAGgCCGGagcguUGCCgCUCg -3'
miRNA:   3'- -UGUCGCG----------CUCGUCgGGCC-----GCGGgGAG- -5'
23142 3' -65.7 NC_005178.1 + 9304 0.68 0.113511
Target:  5'- gGCGGCcaGCGAggcggcaGCGGCCuggauagcggCGGCGCCgCUCa -3'
miRNA:   3'- -UGUCG--CGCU-------CGUCGG----------GCCGCGGgGAG- -5'
23142 3' -65.7 NC_005178.1 + 26342 0.68 0.107748
Target:  5'- gAUGGUGCaGAaCAGCCgGGCGaaCCCCUCu -3'
miRNA:   3'- -UGUCGCG-CUcGUCGGgCCGC--GGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 22901 0.69 0.103964
Target:  5'- gGCGGCGCGcuccugguagaacucCAGCgCGGCGaCCCCUUc -3'
miRNA:   3'- -UGUCGCGCuc-------------GUCGgGCCGC-GGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 15745 0.69 0.103964
Target:  5'- cGCAGUGCGAGCAGCgccauaaccugccuUCGcCGCCgCCUg -3'
miRNA:   3'- -UGUCGCGCUCGUCG--------------GGCcGCGG-GGAg -5'
23142 3' -65.7 NC_005178.1 + 7506 0.69 0.101978
Target:  5'- gAUAGCGCGuGaauGGCCCGGCGCUg--- -3'
miRNA:   3'- -UGUCGCGCuCg--UCGGGCCGCGGggag -5'
23142 3' -65.7 NC_005178.1 + 34425 0.69 0.099204
Target:  5'- gGCAGCGCGGGC-GCU--GCGCUUCUCc -3'
miRNA:   3'- -UGUCGCGCUCGuCGGgcCGCGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 14083 0.69 0.096501
Target:  5'- aGCAGCGgGccGGCuucgcGCCgGGCGCCCUg- -3'
miRNA:   3'- -UGUCGCgC--UCGu----CGGgCCGCGGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.