Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23142 | 3' | -65.7 | NC_005178.1 | + | 10258 | 0.68 | 0.113823 |
Target: 5'- uGCuGCGCcugGAGCuucuGCUCGGCGUUCCUg -3' miRNA: 3'- -UGuCGCG---CUCGu---CGGGCCGCGGGGAg -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 10749 | 0.68 | 0.120216 |
Target: 5'- cACAGCGCGuccCGGCUggaaGGCcuGCCCCUUg -3' miRNA: 3'- -UGUCGCGCuc-GUCGGg---CCG--CGGGGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 16833 | 0.68 | 0.126598 |
Target: 5'- gGCGGCGaUGGGCuuGGCCUGGCccagguaGCUCUUCa -3' miRNA: 3'- -UGUCGC-GCUCG--UCGGGCCG-------CGGGGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 6237 | 0.67 | 0.130435 |
Target: 5'- cCGGCGCGGcGCcaggcgcauAGCCCGGCGCUg--- -3' miRNA: 3'- uGUCGCGCU-CG---------UCGGGCCGCGGggag -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 10138 | 0.67 | 0.134016 |
Target: 5'- cGCAGCGCcuccAGC-GCCUGGauuucCCCCUCa -3' miRNA: 3'- -UGUCGCGc---UCGuCGGGCCgc---GGGGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 30649 | 0.67 | 0.137316 |
Target: 5'- uCAGCgGCGAGCAGCUggacgaagacgggCGGacgcuCGCCCCa- -3' miRNA: 3'- uGUCG-CGCUCGUCGG-------------GCC-----GCGGGGag -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 402 | 0.67 | 0.141451 |
Target: 5'- uCGGUGCGAuaGGCCUGGCggcguaGCUCCUg -3' miRNA: 3'- uGUCGCGCUcgUCGGGCCG------CGGGGAg -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 35643 | 0.66 | 0.153312 |
Target: 5'- uCAaCGUGAGCcucGGCCUGGCGauaCUCCUCa -3' miRNA: 3'- uGUcGCGCUCG---UCGGGCCGC---GGGGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 22901 | 0.69 | 0.103964 |
Target: 5'- gGCGGCGCGcuccugguagaacucCAGCgCGGCGaCCCCUUc -3' miRNA: 3'- -UGUCGCGCuc-------------GUCGgGCCGC-GGGGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 15745 | 0.69 | 0.103964 |
Target: 5'- cGCAGUGCGAGCAGCgccauaaccugccuUCGcCGCCgCCUg -3' miRNA: 3'- -UGUCGCGCUCGUCG--------------GGCcGCGG-GGAg -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 7506 | 0.69 | 0.101978 |
Target: 5'- gAUAGCGCGuGaauGGCCCGGCGCUg--- -3' miRNA: 3'- -UGUCGCGCuCg--UCGGGCCGCGGggag -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 20665 | 0.72 | 0.053591 |
Target: 5'- -gGGCGcCGAGCAGCUCGGCcucGCUaCCUCc -3' miRNA: 3'- ugUCGC-GCUCGUCGGGCCG---CGG-GGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 15409 | 0.7 | 0.075127 |
Target: 5'- aGCAGCGCGGGCu--UCGGCGCCgaaCUUCa -3' miRNA: 3'- -UGUCGCGCUCGucgGGCCGCGG---GGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 26404 | 0.7 | 0.08637 |
Target: 5'- cCAGgGCG-GCGGCCagGGCGCCCg-- -3' miRNA: 3'- uGUCgCGCuCGUCGGg-CCGCGGGgag -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 34839 | 0.7 | 0.08637 |
Target: 5'- gGCGGCGUucAGCAGCgCGGCGCggguuuCCUUCg -3' miRNA: 3'- -UGUCGCGc-UCGUCGgGCCGCG------GGGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 20208 | 0.69 | 0.093867 |
Target: 5'- cCGGCGCGGGCugccgAGCUgGGCGa-CCUCg -3' miRNA: 3'- uGUCGCGCUCG-----UCGGgCCGCggGGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 29545 | 0.69 | 0.093867 |
Target: 5'- cCGGUGUcaGGGuCAGcCCCGGCaGCCCCUg -3' miRNA: 3'- uGUCGCG--CUC-GUC-GGGCCG-CGGGGAg -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 17459 | 0.69 | 0.093867 |
Target: 5'- cGCGGCGCGGGCGGUguauUCGacaCGCCCC-Ca -3' miRNA: 3'- -UGUCGCGCUCGUCG----GGCc--GCGGGGaG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 14083 | 0.69 | 0.096501 |
Target: 5'- aGCAGCGgGccGGCuucgcGCCgGGCGCCCUg- -3' miRNA: 3'- -UGUCGCgC--UCGu----CGGgCCGCGGGGag -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 34425 | 0.69 | 0.099204 |
Target: 5'- gGCAGCGCGGGC-GCU--GCGCUUCUCc -3' miRNA: 3'- -UGUCGCGCUCGuCGGgcCGCGGGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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