Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23142 | 3' | -65.7 | NC_005178.1 | + | 21944 | 0.66 | 0.170528 |
Target: 5'- aACAGCuCG-GCcuAGCCUggaGGUGCCCCUg -3' miRNA: 3'- -UGUCGcGCuCG--UCGGG---CCGCGGGGAg -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 9394 | 0.66 | 0.179769 |
Target: 5'- uACAGC-CGAGgcgccgaccguCAGCCCcugGGCGCCgCCaUCg -3' miRNA: 3'- -UGUCGcGCUC-----------GUCGGG---CCGCGG-GG-AG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 18138 | 0.66 | 0.179769 |
Target: 5'- -aGGC-CGAGCAGCUCGGCugcGCgCCg- -3' miRNA: 3'- ugUCGcGCUCGUCGGGCCG---CGgGGag -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 33016 | 0.66 | 0.179769 |
Target: 5'- gGCGGCGUccggcucgauGGGCAGgCCGGagcguUGCCgCUCg -3' miRNA: 3'- -UGUCGCG----------CUCGUCgGGCC-----GCGGgGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 20208 | 0.69 | 0.093867 |
Target: 5'- cCGGCGCGGGCugccgAGCUgGGCGa-CCUCg -3' miRNA: 3'- uGUCGCGCUCG-----UCGGgCCGCggGGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 34839 | 0.7 | 0.08637 |
Target: 5'- gGCGGCGUucAGCAGCgCGGCGCggguuuCCUUCg -3' miRNA: 3'- -UGUCGCGc-UCGUCGgGCCGCG------GGGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 26404 | 0.7 | 0.08637 |
Target: 5'- cCAGgGCG-GCGGCCagGGCGCCCg-- -3' miRNA: 3'- uGUCgCGCuCGUCGGg-CCGCGGGgag -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 15409 | 0.7 | 0.075127 |
Target: 5'- aGCAGCGCGGGCu--UCGGCGCCgaaCUUCa -3' miRNA: 3'- -UGUCGCGCUCGucgGGCCGCGG---GGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 20665 | 0.72 | 0.053591 |
Target: 5'- -gGGCGcCGAGCAGCUCGGCcucGCUaCCUCc -3' miRNA: 3'- ugUCGC-GCUCGUCGGGCCG---CGG-GGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 27199 | 0.74 | 0.041386 |
Target: 5'- cCAGCuCGGccagcGCAGCCCGGCgcgcuucGCCCCUCc -3' miRNA: 3'- uGUCGcGCU-----CGUCGGGCCG-------CGGGGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 18496 | 0.74 | 0.040338 |
Target: 5'- uGCAGCGCGAGCggcgaaggGGCgCGGCGCgcaCCCg- -3' miRNA: 3'- -UGUCGCGCUCG--------UCGgGCCGCG---GGGag -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 24232 | 1.08 | 5.6e-05 |
Target: 5'- gACAGCGCGAGCAGCCCGGCGCCCCUCg -3' miRNA: 3'- -UGUCGCGCUCGUCGGGCCGCGGGGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 16885 | 0.73 | 0.046506 |
Target: 5'- gUAGCGaggcCGAGCuGCUCGGCGCCCUg- -3' miRNA: 3'- uGUCGC----GCUCGuCGGGCCGCGGGGag -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 14685 | 0.71 | 0.063483 |
Target: 5'- gACGGCGCGAucaucuGCuGgCCGGaugggcaGCCCCUCu -3' miRNA: 3'- -UGUCGCGCU------CGuCgGGCCg------CGGGGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 11142 | 0.71 | 0.069069 |
Target: 5'- uCAGCGCGGGC-GCCCuGGCcgccGCCCUg- -3' miRNA: 3'- uGUCGCGCUCGuCGGG-CCG----CGGGGag -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 31305 | 0.71 | 0.073053 |
Target: 5'- cCAGCGcCGGGCuaugcGCCUGGCGCCgCg- -3' miRNA: 3'- uGUCGC-GCUCGu----CGGGCCGCGGgGag -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 9561 | 0.7 | 0.084 |
Target: 5'- -aAGCGCGAGCGcgauGCCCuGCGCCgCg- -3' miRNA: 3'- ugUCGCGCUCGU----CGGGcCGCGGgGag -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 25395 | 0.68 | 0.125912 |
Target: 5'- gACAGCcgaccaGCaGGCGGCCCGGaucaaggcgaugguCGCCgCCUCc -3' miRNA: 3'- -UGUCG------CGcUCGUCGGGCC--------------GCGG-GGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 16696 | 0.68 | 0.126943 |
Target: 5'- cCGGCGCaGGCAucGCCCaacugagccGGCGCCCUg- -3' miRNA: 3'- uGUCGCGcUCGU--CGGG---------CCGCGGGGag -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 18724 | 0.67 | 0.137687 |
Target: 5'- cGCA-CGCGAuGCGGuCCUGGaCGUCCUUCu -3' miRNA: 3'- -UGUcGCGCU-CGUC-GGGCC-GCGGGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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