Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23142 | 3' | -65.7 | NC_005178.1 | + | 26342 | 0.68 | 0.107748 |
Target: 5'- gAUGGUGCaGAaCAGCCgGGCGaaCCCCUCu -3' miRNA: 3'- -UGUCGCG-CUcGUCGGgCCGC--GGGGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 9304 | 0.68 | 0.113511 |
Target: 5'- gGCGGCcaGCGAggcggcaGCGGCCuggauagcggCGGCGCCgCUCa -3' miRNA: 3'- -UGUCG--CGCU-------CGUCGG----------GCCGCGGgGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 10258 | 0.68 | 0.113823 |
Target: 5'- uGCuGCGCcugGAGCuucuGCUCGGCGUUCCUg -3' miRNA: 3'- -UGuCGCG---CUCGu---CGGGCCGCGGGGAg -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 10749 | 0.68 | 0.120216 |
Target: 5'- cACAGCGCGuccCGGCUggaaGGCcuGCCCCUUg -3' miRNA: 3'- -UGUCGCGCuc-GUCGGg---CCG--CGGGGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 25395 | 0.68 | 0.125912 |
Target: 5'- gACAGCcgaccaGCaGGCGGCCCGGaucaaggcgaugguCGCCgCCUCc -3' miRNA: 3'- -UGUCG------CGcUCGUCGGGCC--------------GCGG-GGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 16833 | 0.68 | 0.126598 |
Target: 5'- gGCGGCGaUGGGCuuGGCCUGGCccagguaGCUCUUCa -3' miRNA: 3'- -UGUCGC-GCUCG--UCGGGCCG-------CGGGGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 16696 | 0.68 | 0.126943 |
Target: 5'- cCGGCGCaGGCAucGCCCaacugagccGGCGCCCUg- -3' miRNA: 3'- uGUCGCGcUCGU--CGGG---------CCGCGGGGag -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 6237 | 0.67 | 0.130435 |
Target: 5'- cCGGCGCGGcGCcaggcgcauAGCCCGGCGCUg--- -3' miRNA: 3'- uGUCGCGCU-CG---------UCGGGCCGCGGggag -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 10138 | 0.67 | 0.134016 |
Target: 5'- cGCAGCGCcuccAGC-GCCUGGauuucCCCCUCa -3' miRNA: 3'- -UGUCGCGc---UCGuCGGGCCgc---GGGGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 30649 | 0.67 | 0.137316 |
Target: 5'- uCAGCgGCGAGCAGCUggacgaagacgggCGGacgcuCGCCCCa- -3' miRNA: 3'- uGUCG-CGCUCGUCGG-------------GCC-----GCGGGGag -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 18724 | 0.67 | 0.137687 |
Target: 5'- cGCA-CGCGAuGCGGuCCUGGaCGUCCUUCu -3' miRNA: 3'- -UGUcGCGCU-CGUC-GGGCC-GCGGGGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 25078 | 0.67 | 0.137687 |
Target: 5'- cCAGCGCGAcCAGCUCGGcCGCUacaCCg- -3' miRNA: 3'- uGUCGCGCUcGUCGGGCC-GCGG---GGag -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 402 | 0.67 | 0.141451 |
Target: 5'- uCGGUGCGAuaGGCCUGGCggcguaGCUCCUg -3' miRNA: 3'- uGUCGCGCUcgUCGGGCCG------CGGGGAg -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 6062 | 0.67 | 0.149261 |
Target: 5'- gACGGUGcCGAGgGGU--GGcCGCCCCUCg -3' miRNA: 3'- -UGUCGC-GCUCgUCGggCC-GCGGGGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 29717 | 0.67 | 0.149261 |
Target: 5'- gACAGCGUG-GC-GCuCCGGCaaCCCCUg -3' miRNA: 3'- -UGUCGCGCuCGuCG-GGCCGc-GGGGAg -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 35643 | 0.66 | 0.153312 |
Target: 5'- uCAaCGUGAGCcucGGCCUGGCGauaCUCCUCa -3' miRNA: 3'- uGUcGCGCUCG---UCGGGCCGC---GGGGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 23448 | 0.66 | 0.153312 |
Target: 5'- cCAGgGCGA-CGGCCagGGCGCCCg-- -3' miRNA: 3'- uGUCgCGCUcGUCGGg-CCGCGGGgag -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 3000 | 0.66 | 0.157462 |
Target: 5'- -gAGCGUGcGCAGCCUGGaGCgCUUCc -3' miRNA: 3'- ugUCGCGCuCGUCGGGCCgCGgGGAG- -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 19190 | 0.66 | 0.157462 |
Target: 5'- uACAGcCGCGuagaguGCcGCCaGGCGCUCCUg -3' miRNA: 3'- -UGUC-GCGCu-----CGuCGGgCCGCGGGGAg -5' |
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23142 | 3' | -65.7 | NC_005178.1 | + | 33857 | 0.66 | 0.157462 |
Target: 5'- uCGGCGcCGAuGUAGCCgGGCaGUUCCUUg -3' miRNA: 3'- uGUCGC-GCU-CGUCGGgCCG-CGGGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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