miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23142 3' -65.7 NC_005178.1 + 26342 0.68 0.107748
Target:  5'- gAUGGUGCaGAaCAGCCgGGCGaaCCCCUCu -3'
miRNA:   3'- -UGUCGCG-CUcGUCGGgCCGC--GGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 9304 0.68 0.113511
Target:  5'- gGCGGCcaGCGAggcggcaGCGGCCuggauagcggCGGCGCCgCUCa -3'
miRNA:   3'- -UGUCG--CGCU-------CGUCGG----------GCCGCGGgGAG- -5'
23142 3' -65.7 NC_005178.1 + 10258 0.68 0.113823
Target:  5'- uGCuGCGCcugGAGCuucuGCUCGGCGUUCCUg -3'
miRNA:   3'- -UGuCGCG---CUCGu---CGGGCCGCGGGGAg -5'
23142 3' -65.7 NC_005178.1 + 10749 0.68 0.120216
Target:  5'- cACAGCGCGuccCGGCUggaaGGCcuGCCCCUUg -3'
miRNA:   3'- -UGUCGCGCuc-GUCGGg---CCG--CGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 25395 0.68 0.125912
Target:  5'- gACAGCcgaccaGCaGGCGGCCCGGaucaaggcgaugguCGCCgCCUCc -3'
miRNA:   3'- -UGUCG------CGcUCGUCGGGCC--------------GCGG-GGAG- -5'
23142 3' -65.7 NC_005178.1 + 16833 0.68 0.126598
Target:  5'- gGCGGCGaUGGGCuuGGCCUGGCccagguaGCUCUUCa -3'
miRNA:   3'- -UGUCGC-GCUCG--UCGGGCCG-------CGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 16696 0.68 0.126943
Target:  5'- cCGGCGCaGGCAucGCCCaacugagccGGCGCCCUg- -3'
miRNA:   3'- uGUCGCGcUCGU--CGGG---------CCGCGGGGag -5'
23142 3' -65.7 NC_005178.1 + 6237 0.67 0.130435
Target:  5'- cCGGCGCGGcGCcaggcgcauAGCCCGGCGCUg--- -3'
miRNA:   3'- uGUCGCGCU-CG---------UCGGGCCGCGGggag -5'
23142 3' -65.7 NC_005178.1 + 10138 0.67 0.134016
Target:  5'- cGCAGCGCcuccAGC-GCCUGGauuucCCCCUCa -3'
miRNA:   3'- -UGUCGCGc---UCGuCGGGCCgc---GGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 30649 0.67 0.137316
Target:  5'- uCAGCgGCGAGCAGCUggacgaagacgggCGGacgcuCGCCCCa- -3'
miRNA:   3'- uGUCG-CGCUCGUCGG-------------GCC-----GCGGGGag -5'
23142 3' -65.7 NC_005178.1 + 25078 0.67 0.137687
Target:  5'- cCAGCGCGAcCAGCUCGGcCGCUacaCCg- -3'
miRNA:   3'- uGUCGCGCUcGUCGGGCC-GCGG---GGag -5'
23142 3' -65.7 NC_005178.1 + 18724 0.67 0.137687
Target:  5'- cGCA-CGCGAuGCGGuCCUGGaCGUCCUUCu -3'
miRNA:   3'- -UGUcGCGCU-CGUC-GGGCC-GCGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 402 0.67 0.141451
Target:  5'- uCGGUGCGAuaGGCCUGGCggcguaGCUCCUg -3'
miRNA:   3'- uGUCGCGCUcgUCGGGCCG------CGGGGAg -5'
23142 3' -65.7 NC_005178.1 + 29717 0.67 0.149261
Target:  5'- gACAGCGUG-GC-GCuCCGGCaaCCCCUg -3'
miRNA:   3'- -UGUCGCGCuCGuCG-GGCCGc-GGGGAg -5'
23142 3' -65.7 NC_005178.1 + 6062 0.67 0.149261
Target:  5'- gACGGUGcCGAGgGGU--GGcCGCCCCUCg -3'
miRNA:   3'- -UGUCGC-GCUCgUCGggCC-GCGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 35643 0.66 0.153312
Target:  5'- uCAaCGUGAGCcucGGCCUGGCGauaCUCCUCa -3'
miRNA:   3'- uGUcGCGCUCG---UCGGGCCGC---GGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 23448 0.66 0.153312
Target:  5'- cCAGgGCGA-CGGCCagGGCGCCCg-- -3'
miRNA:   3'- uGUCgCGCUcGUCGGg-CCGCGGGgag -5'
23142 3' -65.7 NC_005178.1 + 19190 0.66 0.157462
Target:  5'- uACAGcCGCGuagaguGCcGCCaGGCGCUCCUg -3'
miRNA:   3'- -UGUC-GCGCu-----CGuCGGgCCGCGGGGAg -5'
23142 3' -65.7 NC_005178.1 + 33857 0.66 0.157462
Target:  5'- uCGGCGcCGAuGUAGCCgGGCaGUUCCUUg -3'
miRNA:   3'- uGUCGC-GCU-CGUCGGgCCG-CGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 3000 0.66 0.157462
Target:  5'- -gAGCGUGcGCAGCCUGGaGCgCUUCc -3'
miRNA:   3'- ugUCGCGCuCGUCGGGCCgCGgGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.