miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23142 3' -65.7 NC_005178.1 + 24232 1.08 5.6e-05
Target:  5'- gACAGCGCGAGCAGCCCGGCGCCCCUCg -3'
miRNA:   3'- -UGUCGCGCUCGUCGGGCCGCGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 18496 0.74 0.040338
Target:  5'- uGCAGCGCGAGCggcgaaggGGCgCGGCGCgcaCCCg- -3'
miRNA:   3'- -UGUCGCGCUCG--------UCGgGCCGCG---GGGag -5'
23142 3' -65.7 NC_005178.1 + 27199 0.74 0.041386
Target:  5'- cCAGCuCGGccagcGCAGCCCGGCgcgcuucGCCCCUCc -3'
miRNA:   3'- uGUCGcGCU-----CGUCGGGCCG-------CGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 16885 0.73 0.046506
Target:  5'- gUAGCGaggcCGAGCuGCUCGGCGCCCUg- -3'
miRNA:   3'- uGUCGC----GCUCGuCGGGCCGCGGGGag -5'
23142 3' -65.7 NC_005178.1 + 20665 0.72 0.053591
Target:  5'- -gGGCGcCGAGCAGCUCGGCcucGCUaCCUCc -3'
miRNA:   3'- ugUCGC-GCUCGUCGGGCCG---CGG-GGAG- -5'
23142 3' -65.7 NC_005178.1 + 14685 0.71 0.063483
Target:  5'- gACGGCGCGAucaucuGCuGgCCGGaugggcaGCCCCUCu -3'
miRNA:   3'- -UGUCGCGCU------CGuCgGGCCg------CGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 11142 0.71 0.069069
Target:  5'- uCAGCGCGGGC-GCCCuGGCcgccGCCCUg- -3'
miRNA:   3'- uGUCGCGCUCGuCGGG-CCG----CGGGGag -5'
23142 3' -65.7 NC_005178.1 + 31305 0.71 0.073053
Target:  5'- cCAGCGcCGGGCuaugcGCCUGGCGCCgCg- -3'
miRNA:   3'- uGUCGC-GCUCGu----CGGGCCGCGGgGag -5'
23142 3' -65.7 NC_005178.1 + 15409 0.7 0.075127
Target:  5'- aGCAGCGCGGGCu--UCGGCGCCgaaCUUCa -3'
miRNA:   3'- -UGUCGCGCUCGucgGGCCGCGG---GGAG- -5'
23142 3' -65.7 NC_005178.1 + 9561 0.7 0.084
Target:  5'- -aAGCGCGAGCGcgauGCCCuGCGCCgCg- -3'
miRNA:   3'- ugUCGCGCUCGU----CGGGcCGCGGgGag -5'
23142 3' -65.7 NC_005178.1 + 34839 0.7 0.08637
Target:  5'- gGCGGCGUucAGCAGCgCGGCGCggguuuCCUUCg -3'
miRNA:   3'- -UGUCGCGc-UCGUCGgGCCGCG------GGGAG- -5'
23142 3' -65.7 NC_005178.1 + 26404 0.7 0.08637
Target:  5'- cCAGgGCG-GCGGCCagGGCGCCCg-- -3'
miRNA:   3'- uGUCgCGCuCGUCGGg-CCGCGGGgag -5'
23142 3' -65.7 NC_005178.1 + 17459 0.69 0.093867
Target:  5'- cGCGGCGCGGGCGGUguauUCGacaCGCCCC-Ca -3'
miRNA:   3'- -UGUCGCGCUCGUCG----GGCc--GCGGGGaG- -5'
23142 3' -65.7 NC_005178.1 + 29545 0.69 0.093867
Target:  5'- cCGGUGUcaGGGuCAGcCCCGGCaGCCCCUg -3'
miRNA:   3'- uGUCGCG--CUC-GUC-GGGCCG-CGGGGAg -5'
23142 3' -65.7 NC_005178.1 + 20208 0.69 0.093867
Target:  5'- cCGGCGCGGGCugccgAGCUgGGCGa-CCUCg -3'
miRNA:   3'- uGUCGCGCUCG-----UCGGgCCGCggGGAG- -5'
23142 3' -65.7 NC_005178.1 + 14083 0.69 0.096501
Target:  5'- aGCAGCGgGccGGCuucgcGCCgGGCGCCCUg- -3'
miRNA:   3'- -UGUCGCgC--UCGu----CGGgCCGCGGGGag -5'
23142 3' -65.7 NC_005178.1 + 34425 0.69 0.099204
Target:  5'- gGCAGCGCGGGC-GCU--GCGCUUCUCc -3'
miRNA:   3'- -UGUCGCGCUCGuCGGgcCGCGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 7506 0.69 0.101978
Target:  5'- gAUAGCGCGuGaauGGCCCGGCGCUg--- -3'
miRNA:   3'- -UGUCGCGCuCg--UCGGGCCGCGGggag -5'
23142 3' -65.7 NC_005178.1 + 15745 0.69 0.103964
Target:  5'- cGCAGUGCGAGCAGCgccauaaccugccuUCGcCGCCgCCUg -3'
miRNA:   3'- -UGUCGCGCUCGUCG--------------GGCcGCGG-GGAg -5'
23142 3' -65.7 NC_005178.1 + 22901 0.69 0.103964
Target:  5'- gGCGGCGCGcuccugguagaacucCAGCgCGGCGaCCCCUUc -3'
miRNA:   3'- -UGUCGCGCuc-------------GUCGgGCCGC-GGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.