miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23142 3' -65.7 NC_005178.1 + 402 0.67 0.141451
Target:  5'- uCGGUGCGAuaGGCCUGGCggcguaGCUCCUg -3'
miRNA:   3'- uGUCGCGCUcgUCGGGCCG------CGGGGAg -5'
23142 3' -65.7 NC_005178.1 + 3000 0.66 0.157462
Target:  5'- -gAGCGUGcGCAGCCUGGaGCgCUUCc -3'
miRNA:   3'- ugUCGCGCuCGUCGGGCCgCGgGGAG- -5'
23142 3' -65.7 NC_005178.1 + 6062 0.67 0.149261
Target:  5'- gACGGUGcCGAGgGGU--GGcCGCCCCUCg -3'
miRNA:   3'- -UGUCGC-GCUCgUCGggCC-GCGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 6237 0.67 0.130435
Target:  5'- cCGGCGCGGcGCcaggcgcauAGCCCGGCGCUg--- -3'
miRNA:   3'- uGUCGCGCU-CG---------UCGGGCCGCGGggag -5'
23142 3' -65.7 NC_005178.1 + 7506 0.69 0.101978
Target:  5'- gAUAGCGCGuGaauGGCCCGGCGCUg--- -3'
miRNA:   3'- -UGUCGCGCuCg--UCGGGCCGCGGggag -5'
23142 3' -65.7 NC_005178.1 + 9304 0.68 0.113511
Target:  5'- gGCGGCcaGCGAggcggcaGCGGCCuggauagcggCGGCGCCgCUCa -3'
miRNA:   3'- -UGUCG--CGCU-------CGUCGG----------GCCGCGGgGAG- -5'
23142 3' -65.7 NC_005178.1 + 9394 0.66 0.179769
Target:  5'- uACAGC-CGAGgcgccgaccguCAGCCCcugGGCGCCgCCaUCg -3'
miRNA:   3'- -UGUCGcGCUC-----------GUCGGG---CCGCGG-GG-AG- -5'
23142 3' -65.7 NC_005178.1 + 9561 0.7 0.084
Target:  5'- -aAGCGCGAGCGcgauGCCCuGCGCCgCg- -3'
miRNA:   3'- ugUCGCGCUCGU----CGGGcCGCGGgGag -5'
23142 3' -65.7 NC_005178.1 + 10138 0.67 0.134016
Target:  5'- cGCAGCGCcuccAGC-GCCUGGauuucCCCCUCa -3'
miRNA:   3'- -UGUCGCGc---UCGuCGGGCCgc---GGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 10258 0.68 0.113823
Target:  5'- uGCuGCGCcugGAGCuucuGCUCGGCGUUCCUg -3'
miRNA:   3'- -UGuCGCG---CUCGu---CGGGCCGCGGGGAg -5'
23142 3' -65.7 NC_005178.1 + 10749 0.68 0.120216
Target:  5'- cACAGCGCGuccCGGCUggaaGGCcuGCCCCUUg -3'
miRNA:   3'- -UGUCGCGCuc-GUCGGg---CCG--CGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 11142 0.71 0.069069
Target:  5'- uCAGCGCGGGC-GCCCuGGCcgccGCCCUg- -3'
miRNA:   3'- uGUCGCGCUCGuCGGG-CCG----CGGGGag -5'
23142 3' -65.7 NC_005178.1 + 14083 0.69 0.096501
Target:  5'- aGCAGCGgGccGGCuucgcGCCgGGCGCCCUg- -3'
miRNA:   3'- -UGUCGCgC--UCGu----CGGgCCGCGGGGag -5'
23142 3' -65.7 NC_005178.1 + 14685 0.71 0.063483
Target:  5'- gACGGCGCGAucaucuGCuGgCCGGaugggcaGCCCCUCu -3'
miRNA:   3'- -UGUCGCGCU------CGuCgGGCCg------CGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 15409 0.7 0.075127
Target:  5'- aGCAGCGCGGGCu--UCGGCGCCgaaCUUCa -3'
miRNA:   3'- -UGUCGCGCUCGucgGGCCGCGG---GGAG- -5'
23142 3' -65.7 NC_005178.1 + 15745 0.69 0.103964
Target:  5'- cGCAGUGCGAGCAGCgccauaaccugccuUCGcCGCCgCCUg -3'
miRNA:   3'- -UGUCGCGCUCGUCG--------------GGCcGCGG-GGAg -5'
23142 3' -65.7 NC_005178.1 + 16696 0.68 0.126943
Target:  5'- cCGGCGCaGGCAucGCCCaacugagccGGCGCCCUg- -3'
miRNA:   3'- uGUCGCGcUCGU--CGGG---------CCGCGGGGag -5'
23142 3' -65.7 NC_005178.1 + 16833 0.68 0.126598
Target:  5'- gGCGGCGaUGGGCuuGGCCUGGCccagguaGCUCUUCa -3'
miRNA:   3'- -UGUCGC-GCUCG--UCGGGCCG-------CGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 16885 0.73 0.046506
Target:  5'- gUAGCGaggcCGAGCuGCUCGGCGCCCUg- -3'
miRNA:   3'- uGUCGC----GCUCGuCGGGCCGCGGGGag -5'
23142 3' -65.7 NC_005178.1 + 17459 0.69 0.093867
Target:  5'- cGCGGCGCGGGCGGUguauUCGacaCGCCCC-Ca -3'
miRNA:   3'- -UGUCGCGCUCGUCG----GGCc--GCGGGGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.