miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23142 3' -65.7 NC_005178.1 + 33016 0.66 0.179769
Target:  5'- gGCGGCGUccggcucgauGGGCAGgCCGGagcguUGCCgCUCg -3'
miRNA:   3'- -UGUCGCG----------CUCGUCgGGCC-----GCGGgGAG- -5'
23142 3' -65.7 NC_005178.1 + 9394 0.66 0.179769
Target:  5'- uACAGC-CGAGgcgccgaccguCAGCCCcugGGCGCCgCCaUCg -3'
miRNA:   3'- -UGUCGcGCUC-----------GUCGGG---CCGCGG-GG-AG- -5'
23142 3' -65.7 NC_005178.1 + 18138 0.66 0.179769
Target:  5'- -aGGC-CGAGCAGCUCGGCugcGCgCCg- -3'
miRNA:   3'- ugUCGcGCUCGUCGGGCCG---CGgGGag -5'
23142 3' -65.7 NC_005178.1 + 35643 0.66 0.153312
Target:  5'- uCAaCGUGAGCcucGGCCUGGCGauaCUCCUCa -3'
miRNA:   3'- uGUcGCGCUCG---UCGGGCCGC---GGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 28815 0.66 0.170077
Target:  5'- cACGGCaaggGCGaAGUAGCCCucgccugGGUGUUCCUCc -3'
miRNA:   3'- -UGUCG----CGC-UCGUCGGG-------CCGCGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 33857 0.66 0.157462
Target:  5'- uCGGCGcCGAuGUAGCCgGGCaGUUCCUUg -3'
miRNA:   3'- uGUCGC-GCU-CGUCGGgCCG-CGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 21944 0.66 0.170528
Target:  5'- aACAGCuCG-GCcuAGCCUggaGGUGCCCCUg -3'
miRNA:   3'- -UGUCGcGCuCG--UCGGG---CCGCGGGGAg -5'
23142 3' -65.7 NC_005178.1 + 19190 0.66 0.157462
Target:  5'- uACAGcCGCGuagaguGCcGCCaGGCGCUCCUg -3'
miRNA:   3'- -UGUC-GCGCu-----CGuCGGgCCGCGGGGAg -5'
23142 3' -65.7 NC_005178.1 + 20751 0.66 0.179769
Target:  5'- aACAGCa-GAGC-GCCgGGCGUaCCUCg -3'
miRNA:   3'- -UGUCGcgCUCGuCGGgCCGCGgGGAG- -5'
23142 3' -65.7 NC_005178.1 + 31243 0.66 0.170528
Target:  5'- gACAGCaucguCGAGC-GCCUGaGCGCCUCg- -3'
miRNA:   3'- -UGUCGc----GCUCGuCGGGC-CGCGGGGag -5'
23142 3' -65.7 NC_005178.1 + 37492 0.66 0.161714
Target:  5'- cCAGCGCGAaugcaucgaGCAGCUCGGcCGaUUCCUg -3'
miRNA:   3'- uGUCGCGCU---------CGUCGGGCC-GC-GGGGAg -5'
23142 3' -65.7 NC_005178.1 + 23448 0.66 0.153312
Target:  5'- cCAGgGCGA-CGGCCagGGCGCCCg-- -3'
miRNA:   3'- uGUCgCGCUcGUCGGg-CCGCGGGgag -5'
23142 3' -65.7 NC_005178.1 + 3000 0.66 0.157462
Target:  5'- -gAGCGUGcGCAGCCUGGaGCgCUUCc -3'
miRNA:   3'- ugUCGCGCuCGUCGGGCCgCGgGGAG- -5'
23142 3' -65.7 NC_005178.1 + 25078 0.67 0.137687
Target:  5'- cCAGCGCGAcCAGCUCGGcCGCUacaCCg- -3'
miRNA:   3'- uGUCGCGCUcGUCGGGCC-GCGG---GGag -5'
23142 3' -65.7 NC_005178.1 + 30649 0.67 0.137316
Target:  5'- uCAGCgGCGAGCAGCUggacgaagacgggCGGacgcuCGCCCCa- -3'
miRNA:   3'- uGUCG-CGCUCGUCGG-------------GCC-----GCGGGGag -5'
23142 3' -65.7 NC_005178.1 + 29717 0.67 0.149261
Target:  5'- gACAGCGUG-GC-GCuCCGGCaaCCCCUg -3'
miRNA:   3'- -UGUCGCGCuCGuCG-GGCCGc-GGGGAg -5'
23142 3' -65.7 NC_005178.1 + 6062 0.67 0.149261
Target:  5'- gACGGUGcCGAGgGGU--GGcCGCCCCUCg -3'
miRNA:   3'- -UGUCGC-GCUCgUCGggCC-GCGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 6237 0.67 0.130435
Target:  5'- cCGGCGCGGcGCcaggcgcauAGCCCGGCGCUg--- -3'
miRNA:   3'- uGUCGCGCU-CG---------UCGGGCCGCGGggag -5'
23142 3' -65.7 NC_005178.1 + 18724 0.67 0.137687
Target:  5'- cGCA-CGCGAuGCGGuCCUGGaCGUCCUUCu -3'
miRNA:   3'- -UGUcGCGCU-CGUC-GGGCC-GCGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 10138 0.67 0.134016
Target:  5'- cGCAGCGCcuccAGC-GCCUGGauuucCCCCUCa -3'
miRNA:   3'- -UGUCGCGc---UCGuCGGGCCgc---GGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.