miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23142 3' -65.7 NC_005178.1 + 18496 0.74 0.040338
Target:  5'- uGCAGCGCGAGCggcgaaggGGCgCGGCGCgcaCCCg- -3'
miRNA:   3'- -UGUCGCGCUCG--------UCGgGCCGCG---GGGag -5'
23142 3' -65.7 NC_005178.1 + 20751 0.66 0.179769
Target:  5'- aACAGCa-GAGC-GCCgGGCGUaCCUCg -3'
miRNA:   3'- -UGUCGcgCUCGuCGGgCCGCGgGGAG- -5'
23142 3' -65.7 NC_005178.1 + 31243 0.66 0.170528
Target:  5'- gACAGCaucguCGAGC-GCCUGaGCGCCUCg- -3'
miRNA:   3'- -UGUCGc----GCUCGuCGGGC-CGCGGGGag -5'
23142 3' -65.7 NC_005178.1 + 37492 0.66 0.161714
Target:  5'- cCAGCGCGAaugcaucgaGCAGCUCGGcCGaUUCCUg -3'
miRNA:   3'- uGUCGCGCU---------CGUCGGGCC-GC-GGGGAg -5'
23142 3' -65.7 NC_005178.1 + 3000 0.66 0.157462
Target:  5'- -gAGCGUGcGCAGCCUGGaGCgCUUCc -3'
miRNA:   3'- ugUCGCGCuCGUCGGGCCgCGgGGAG- -5'
23142 3' -65.7 NC_005178.1 + 23448 0.66 0.153312
Target:  5'- cCAGgGCGA-CGGCCagGGCGCCCg-- -3'
miRNA:   3'- uGUCgCGCUcGUCGGg-CCGCGGGgag -5'
23142 3' -65.7 NC_005178.1 + 29717 0.67 0.149261
Target:  5'- gACAGCGUG-GC-GCuCCGGCaaCCCCUg -3'
miRNA:   3'- -UGUCGCGCuCGuCG-GGCCGc-GGGGAg -5'
23142 3' -65.7 NC_005178.1 + 6062 0.67 0.149261
Target:  5'- gACGGUGcCGAGgGGU--GGcCGCCCCUCg -3'
miRNA:   3'- -UGUCGC-GCUCgUCGggCC-GCGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 25078 0.67 0.137687
Target:  5'- cCAGCGCGAcCAGCUCGGcCGCUacaCCg- -3'
miRNA:   3'- uGUCGCGCUcGUCGGGCC-GCGG---GGag -5'
23142 3' -65.7 NC_005178.1 + 18724 0.67 0.137687
Target:  5'- cGCA-CGCGAuGCGGuCCUGGaCGUCCUUCu -3'
miRNA:   3'- -UGUcGCGCU-CGUC-GGGCC-GCGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 16696 0.68 0.126943
Target:  5'- cCGGCGCaGGCAucGCCCaacugagccGGCGCCCUg- -3'
miRNA:   3'- uGUCGCGcUCGU--CGGG---------CCGCGGGGag -5'
23142 3' -65.7 NC_005178.1 + 25395 0.68 0.125912
Target:  5'- gACAGCcgaccaGCaGGCGGCCCGGaucaaggcgaugguCGCCgCCUCc -3'
miRNA:   3'- -UGUCG------CGcUCGUCGGGCC--------------GCGG-GGAG- -5'
23142 3' -65.7 NC_005178.1 + 9561 0.7 0.084
Target:  5'- -aAGCGCGAGCGcgauGCCCuGCGCCgCg- -3'
miRNA:   3'- ugUCGCGCUCGU----CGGGcCGCGGgGag -5'
23142 3' -65.7 NC_005178.1 + 31305 0.71 0.073053
Target:  5'- cCAGCGcCGGGCuaugcGCCUGGCGCCgCg- -3'
miRNA:   3'- uGUCGC-GCUCGu----CGGGCCGCGGgGag -5'
23142 3' -65.7 NC_005178.1 + 11142 0.71 0.069069
Target:  5'- uCAGCGCGGGC-GCCCuGGCcgccGCCCUg- -3'
miRNA:   3'- uGUCGCGCUCGuCGGG-CCG----CGGGGag -5'
23142 3' -65.7 NC_005178.1 + 14685 0.71 0.063483
Target:  5'- gACGGCGCGAucaucuGCuGgCCGGaugggcaGCCCCUCu -3'
miRNA:   3'- -UGUCGCGCU------CGuCgGGCCg------CGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 16885 0.73 0.046506
Target:  5'- gUAGCGaggcCGAGCuGCUCGGCGCCCUg- -3'
miRNA:   3'- uGUCGC----GCUCGuCGGGCCGCGGGGag -5'
23142 3' -65.7 NC_005178.1 + 24232 1.08 5.6e-05
Target:  5'- gACAGCGCGAGCAGCCCGGCGCCCCUCg -3'
miRNA:   3'- -UGUCGCGCUCGUCGGGCCGCGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 27199 0.74 0.041386
Target:  5'- cCAGCuCGGccagcGCAGCCCGGCgcgcuucGCCCCUCc -3'
miRNA:   3'- uGUCGcGCU-----CGUCGGGCCG-------CGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 20665 0.72 0.053591
Target:  5'- -gGGCGcCGAGCAGCUCGGCcucGCUaCCUCc -3'
miRNA:   3'- ugUCGC-GCUCGUCGGGCCG---CGG-GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.