miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23142 3' -65.7 NC_005178.1 + 18138 0.66 0.179769
Target:  5'- -aGGC-CGAGCAGCUCGGCugcGCgCCg- -3'
miRNA:   3'- ugUCGcGCUCGUCGGGCCG---CGgGGag -5'
23142 3' -65.7 NC_005178.1 + 18496 0.74 0.040338
Target:  5'- uGCAGCGCGAGCggcgaaggGGCgCGGCGCgcaCCCg- -3'
miRNA:   3'- -UGUCGCGCUCG--------UCGgGCCGCG---GGGag -5'
23142 3' -65.7 NC_005178.1 + 18724 0.67 0.137687
Target:  5'- cGCA-CGCGAuGCGGuCCUGGaCGUCCUUCu -3'
miRNA:   3'- -UGUcGCGCU-CGUC-GGGCC-GCGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 19190 0.66 0.157462
Target:  5'- uACAGcCGCGuagaguGCcGCCaGGCGCUCCUg -3'
miRNA:   3'- -UGUC-GCGCu-----CGuCGGgCCGCGGGGAg -5'
23142 3' -65.7 NC_005178.1 + 20208 0.69 0.093867
Target:  5'- cCGGCGCGGGCugccgAGCUgGGCGa-CCUCg -3'
miRNA:   3'- uGUCGCGCUCG-----UCGGgCCGCggGGAG- -5'
23142 3' -65.7 NC_005178.1 + 20665 0.72 0.053591
Target:  5'- -gGGCGcCGAGCAGCUCGGCcucGCUaCCUCc -3'
miRNA:   3'- ugUCGC-GCUCGUCGGGCCG---CGG-GGAG- -5'
23142 3' -65.7 NC_005178.1 + 20751 0.66 0.179769
Target:  5'- aACAGCa-GAGC-GCCgGGCGUaCCUCg -3'
miRNA:   3'- -UGUCGcgCUCGuCGGgCCGCGgGGAG- -5'
23142 3' -65.7 NC_005178.1 + 21944 0.66 0.170528
Target:  5'- aACAGCuCG-GCcuAGCCUggaGGUGCCCCUg -3'
miRNA:   3'- -UGUCGcGCuCG--UCGGG---CCGCGGGGAg -5'
23142 3' -65.7 NC_005178.1 + 22901 0.69 0.103964
Target:  5'- gGCGGCGCGcuccugguagaacucCAGCgCGGCGaCCCCUUc -3'
miRNA:   3'- -UGUCGCGCuc-------------GUCGgGCCGC-GGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 23448 0.66 0.153312
Target:  5'- cCAGgGCGA-CGGCCagGGCGCCCg-- -3'
miRNA:   3'- uGUCgCGCUcGUCGGg-CCGCGGGgag -5'
23142 3' -65.7 NC_005178.1 + 24232 1.08 5.6e-05
Target:  5'- gACAGCGCGAGCAGCCCGGCGCCCCUCg -3'
miRNA:   3'- -UGUCGCGCUCGUCGGGCCGCGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 25078 0.67 0.137687
Target:  5'- cCAGCGCGAcCAGCUCGGcCGCUacaCCg- -3'
miRNA:   3'- uGUCGCGCUcGUCGGGCC-GCGG---GGag -5'
23142 3' -65.7 NC_005178.1 + 25395 0.68 0.125912
Target:  5'- gACAGCcgaccaGCaGGCGGCCCGGaucaaggcgaugguCGCCgCCUCc -3'
miRNA:   3'- -UGUCG------CGcUCGUCGGGCC--------------GCGG-GGAG- -5'
23142 3' -65.7 NC_005178.1 + 26342 0.68 0.107748
Target:  5'- gAUGGUGCaGAaCAGCCgGGCGaaCCCCUCu -3'
miRNA:   3'- -UGUCGCG-CUcGUCGGgCCGC--GGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 26404 0.7 0.08637
Target:  5'- cCAGgGCG-GCGGCCagGGCGCCCg-- -3'
miRNA:   3'- uGUCgCGCuCGUCGGg-CCGCGGGgag -5'
23142 3' -65.7 NC_005178.1 + 27199 0.74 0.041386
Target:  5'- cCAGCuCGGccagcGCAGCCCGGCgcgcuucGCCCCUCc -3'
miRNA:   3'- uGUCGcGCU-----CGUCGGGCCG-------CGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 28815 0.66 0.170077
Target:  5'- cACGGCaaggGCGaAGUAGCCCucgccugGGUGUUCCUCc -3'
miRNA:   3'- -UGUCG----CGC-UCGUCGGG-------CCGCGGGGAG- -5'
23142 3' -65.7 NC_005178.1 + 29545 0.69 0.093867
Target:  5'- cCGGUGUcaGGGuCAGcCCCGGCaGCCCCUg -3'
miRNA:   3'- uGUCGCG--CUC-GUC-GGGCCG-CGGGGAg -5'
23142 3' -65.7 NC_005178.1 + 29717 0.67 0.149261
Target:  5'- gACAGCGUG-GC-GCuCCGGCaaCCCCUg -3'
miRNA:   3'- -UGUCGCGCuCGuCG-GGCCGc-GGGGAg -5'
23142 3' -65.7 NC_005178.1 + 30649 0.67 0.137316
Target:  5'- uCAGCgGCGAGCAGCUggacgaagacgggCGGacgcuCGCCCCa- -3'
miRNA:   3'- uGUCG-CGCUCGUCGG-------------GCC-----GCGGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.