miRNA display CGI


Results 21 - 40 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23153 3' -60.5 NC_005178.1 + 17803 0.67 0.263346
Target:  5'- --gCCGCCAUGGUGGCgacgguCgAGCGCGg- -3'
miRNA:   3'- caaGGUGGUGCCGCCG------GgUCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 18176 0.67 0.263346
Target:  5'- -cUCUACCcUGGCGGUUCGGCugcgcggugGCGUCu -3'
miRNA:   3'- caAGGUGGuGCCGCCGGGUCG---------CGUAG- -5'
23153 3' -60.5 NC_005178.1 + 30633 0.67 0.263346
Target:  5'- --gCCACCGauuuCGGCaGCaCCAGCGCcuggGUCg -3'
miRNA:   3'- caaGGUGGU----GCCGcCG-GGUCGCG----UAG- -5'
23153 3' -60.5 NC_005178.1 + 22889 0.67 0.263346
Target:  5'- -gUCCuCCAUGGCGGC--GGCGCGc- -3'
miRNA:   3'- caAGGuGGUGCCGCCGggUCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 2967 0.68 0.250105
Target:  5'- -aUCC-UCGCGGCcGCCCgAGCGCGg- -3'
miRNA:   3'- caAGGuGGUGCCGcCGGG-UCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 24446 0.68 0.243693
Target:  5'- -cUCCAUaGCGGUGGCC-AGCGCu-- -3'
miRNA:   3'- caAGGUGgUGCCGCCGGgUCGCGuag -5'
23153 3' -60.5 NC_005178.1 + 15282 0.68 0.243693
Target:  5'- --cCCGCCGCcuGGCGGgCCAGCcugGCgGUCg -3'
miRNA:   3'- caaGGUGGUG--CCGCCgGGUCG---CG-UAG- -5'
23153 3' -60.5 NC_005178.1 + 36347 0.68 0.237418
Target:  5'- -gUCCAgCGCGGCGG-CgAGUGCAc- -3'
miRNA:   3'- caAGGUgGUGCCGCCgGgUCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 25740 0.68 0.225274
Target:  5'- --gUCACCAgGGCGGCC-AGgGUGUCc -3'
miRNA:   3'- caaGGUGGUgCCGCCGGgUCgCGUAG- -5'
23153 3' -60.5 NC_005178.1 + 27195 0.68 0.225274
Target:  5'- --cCCACCAgcuCGGCcagcgcaGCCCGGCGCGcuUCg -3'
miRNA:   3'- caaGGUGGU---GCCGc------CGGGUCGCGU--AG- -5'
23153 3' -60.5 NC_005178.1 + 28755 0.68 0.219402
Target:  5'- --gCCgACCugGuGCGGCUCAGCGguUg -3'
miRNA:   3'- caaGG-UGGugC-CGCCGGGUCGCguAg -5'
23153 3' -60.5 NC_005178.1 + 14146 0.68 0.219402
Target:  5'- --gUCAgCACGGCuGCCCAGUGCu-- -3'
miRNA:   3'- caaGGUgGUGCCGcCGGGUCGCGuag -5'
23153 3' -60.5 NC_005178.1 + 12095 0.69 0.20805
Target:  5'- uUUCCGCCA--GCGcGUCCAGCGCuUCc -3'
miRNA:   3'- cAAGGUGGUgcCGC-CGGGUCGCGuAG- -5'
23153 3' -60.5 NC_005178.1 + 23456 0.69 0.202567
Target:  5'- --aCgGCCAgGGC-GCCCGGCGCGa- -3'
miRNA:   3'- caaGgUGGUgCCGcCGGGUCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 11252 0.69 0.202025
Target:  5'- --gCCGCCAUGGCGgacaguuGCCCGGCGg--- -3'
miRNA:   3'- caaGGUGGUGCCGC-------CGGGUCGCguag -5'
23153 3' -60.5 NC_005178.1 + 21205 0.69 0.199337
Target:  5'- --gCCGCCACGGaCGGCaccgaaacccgcuccCCGGCcggccGCAUCa -3'
miRNA:   3'- caaGGUGGUGCC-GCCG---------------GGUCG-----CGUAG- -5'
23153 3' -60.5 NC_005178.1 + 30811 0.69 0.197209
Target:  5'- -cUCgACCugGGcCGGCgucuacgCGGCGCAUCa -3'
miRNA:   3'- caAGgUGGugCC-GCCGg------GUCGCGUAG- -5'
23153 3' -60.5 NC_005178.1 + 13551 0.69 0.191976
Target:  5'- --cUCGCCuauGCGGCGGgUCAGCGuCGUCu -3'
miRNA:   3'- caaGGUGG---UGCCGCCgGGUCGC-GUAG- -5'
23153 3' -60.5 NC_005178.1 + 20328 0.69 0.186864
Target:  5'- cGUUCCGCCACGuuccaGGUuaucgaCCAGgGCGUCg -3'
miRNA:   3'- -CAAGGUGGUGCcg---CCG------GGUCgCGUAG- -5'
23153 3' -60.5 NC_005178.1 + 6236 0.7 0.177
Target:  5'- --cCCGgCGCGGCGccaggcgcauaGCCCGGCGCuggGUCa -3'
miRNA:   3'- caaGGUgGUGCCGC-----------CGGGUCGCG---UAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.