miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23153 3' -60.5 NC_005178.1 + 23456 0.69 0.202567
Target:  5'- --aCgGCCAgGGC-GCCCGGCGCGa- -3'
miRNA:   3'- caaGgUGGUgCCGcCGGGUCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 12095 0.69 0.20805
Target:  5'- uUUCCGCCA--GCGcGUCCAGCGCuUCc -3'
miRNA:   3'- cAAGGUGGUgcCGC-CGGGUCGCGuAG- -5'
23153 3' -60.5 NC_005178.1 + 28755 0.68 0.219402
Target:  5'- --gCCgACCugGuGCGGCUCAGCGguUg -3'
miRNA:   3'- caaGG-UGGugC-CGCCGGGUCGCguAg -5'
23153 3' -60.5 NC_005178.1 + 14146 0.68 0.219402
Target:  5'- --gUCAgCACGGCuGCCCAGUGCu-- -3'
miRNA:   3'- caaGGUgGUGCCGcCGGGUCGCGuag -5'
23153 3' -60.5 NC_005178.1 + 25740 0.68 0.225274
Target:  5'- --gUCACCAgGGCGGCC-AGgGUGUCc -3'
miRNA:   3'- caaGGUGGUgCCGCCGGgUCgCGUAG- -5'
23153 3' -60.5 NC_005178.1 + 27195 0.68 0.225274
Target:  5'- --cCCACCAgcuCGGCcagcgcaGCCCGGCGCGcuUCg -3'
miRNA:   3'- caaGGUGGU---GCCGc------CGGGUCGCGU--AG- -5'
23153 3' -60.5 NC_005178.1 + 36347 0.68 0.237418
Target:  5'- -gUCCAgCGCGGCGG-CgAGUGCAc- -3'
miRNA:   3'- caAGGUgGUGCCGCCgGgUCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 24446 0.68 0.243693
Target:  5'- -cUCCAUaGCGGUGGCC-AGCGCu-- -3'
miRNA:   3'- caAGGUGgUGCCGCCGGgUCGCGuag -5'
23153 3' -60.5 NC_005178.1 + 15282 0.68 0.243693
Target:  5'- --cCCGCCGCcuGGCGGgCCAGCcugGCgGUCg -3'
miRNA:   3'- caaGGUGGUG--CCGCCgGGUCG---CG-UAG- -5'
23153 3' -60.5 NC_005178.1 + 2967 0.68 0.250105
Target:  5'- -aUCC-UCGCGGCcGCCCgAGCGCGg- -3'
miRNA:   3'- caAGGuGGUGCCGcCGGG-UCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 22889 0.67 0.263346
Target:  5'- -gUCCuCCAUGGCGGC--GGCGCGc- -3'
miRNA:   3'- caAGGuGGUGCCGCCGggUCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 18176 0.67 0.263346
Target:  5'- -cUCUACCcUGGCGGUUCGGCugcgcggugGCGUCu -3'
miRNA:   3'- caAGGUGGuGCCGCCGGGUCG---------CGUAG- -5'
23153 3' -60.5 NC_005178.1 + 30633 0.67 0.263346
Target:  5'- --gCCACCGauuuCGGCaGCaCCAGCGCcuggGUCg -3'
miRNA:   3'- caaGGUGGU----GCCGcCG-GGUCGCG----UAG- -5'
23153 3' -60.5 NC_005178.1 + 17803 0.67 0.263346
Target:  5'- --gCCGCCAUGGUGGCgacgguCgAGCGCGg- -3'
miRNA:   3'- caaGGUGGUGCCGCCG------GgUCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 27625 0.67 0.266062
Target:  5'- aGUUCCACCAguaccuggucaaucUGGCgcGGCCCuaaguccuuggccgAGCGCAc- -3'
miRNA:   3'- -CAAGGUGGU--------------GCCG--CCGGG--------------UCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 24755 0.67 0.270178
Target:  5'- --cCCACCAC-GCGGCCCucaaGGC-CAUUg -3'
miRNA:   3'- caaGGUGGUGcCGCCGGG----UCGcGUAG- -5'
23153 3' -60.5 NC_005178.1 + 5682 0.67 0.270178
Target:  5'- --aCCACCGaGGCGGUCUGGCGgaCGUUg -3'
miRNA:   3'- caaGGUGGUgCCGCCGGGUCGC--GUAG- -5'
23153 3' -60.5 NC_005178.1 + 20651 0.67 0.277152
Target:  5'- aUUCCGuCCAUGGa-GCCCugGGCGCGUg -3'
miRNA:   3'- cAAGGU-GGUGCCgcCGGG--UCGCGUAg -5'
23153 3' -60.5 NC_005178.1 + 11780 0.67 0.277152
Target:  5'- gGUUCCGCCGCaGGcCGGCCU-GCaCAUg -3'
miRNA:   3'- -CAAGGUGGUG-CC-GCCGGGuCGcGUAg -5'
23153 3' -60.5 NC_005178.1 + 10790 0.67 0.277152
Target:  5'- --gCCGCCAuccUGGcCGaGCCCAGCcgcgaGCGUCg -3'
miRNA:   3'- caaGGUGGU---GCC-GC-CGGGUCG-----CGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.