Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 15282 | 0.68 | 0.243693 |
Target: 5'- --cCCGCCGCcuGGCGGgCCAGCcugGCgGUCg -3' miRNA: 3'- caaGGUGGUG--CCGCCgGGUCG---CG-UAG- -5' |
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23153 | 3' | -60.5 | NC_005178.1 | + | 17592 | 0.75 | 0.069762 |
Target: 5'- cGUUCCGuuGaCGGCGGCCgCuGUGCGUCg -3' miRNA: 3'- -CAAGGUggU-GCCGCCGG-GuCGCGUAG- -5' |
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23153 | 3' | -60.5 | NC_005178.1 | + | 17628 | 0.75 | 0.076082 |
Target: 5'- --aUCACUGCGGCGGCaCUGGCgGCAUCg -3' miRNA: 3'- caaGGUGGUGCCGCCG-GGUCG-CGUAG- -5' |
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23153 | 3' | -60.5 | NC_005178.1 | + | 17803 | 0.67 | 0.263346 |
Target: 5'- --gCCGCCAUGGUGGCgacgguCgAGCGCGg- -3' miRNA: 3'- caaGGUGGUGCCGCCG------GgUCGCGUag -5' |
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23153 | 3' | -60.5 | NC_005178.1 | + | 18176 | 0.67 | 0.263346 |
Target: 5'- -cUCUACCcUGGCGGUUCGGCugcgcggugGCGUCu -3' miRNA: 3'- caAGGUGGuGCCGCCGGGUCG---------CGUAG- -5' |
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23153 | 3' | -60.5 | NC_005178.1 | + | 20328 | 0.69 | 0.186864 |
Target: 5'- cGUUCCGCCACGuuccaGGUuaucgaCCAGgGCGUCg -3' miRNA: 3'- -CAAGGUGGUGCcg---CCG------GGUCgCGUAG- -5' |
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23153 | 3' | -60.5 | NC_005178.1 | + | 20651 | 0.67 | 0.277152 |
Target: 5'- aUUCCGuCCAUGGa-GCCCugGGCGCGUg -3' miRNA: 3'- cAAGGU-GGUGCCgcCGGG--UCGCGUAg -5' |
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23153 | 3' | -60.5 | NC_005178.1 | + | 21205 | 0.69 | 0.199337 |
Target: 5'- --gCCGCCACGGaCGGCaccgaaacccgcuccCCGGCcggccGCAUCa -3' miRNA: 3'- caaGGUGGUGCC-GCCG---------------GGUCG-----CGUAG- -5' |
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23153 | 3' | -60.5 | NC_005178.1 | + | 21873 | 0.67 | 0.284268 |
Target: 5'- -cUCCcCCAacgugcuccUGGuCGGCCCGGCGCu-- -3' miRNA: 3'- caAGGuGGU---------GCC-GCCGGGUCGCGuag -5' |
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23153 | 3' | -60.5 | NC_005178.1 | + | 22116 | 0.7 | 0.158654 |
Target: 5'- -aUCCACgAUGGCGGCCaucGuUGCGUCu -3' miRNA: 3'- caAGGUGgUGCCGCCGGgu-C-GCGUAG- -5' |
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23153 | 3' | -60.5 | NC_005178.1 | + | 22278 | 0.71 | 0.154343 |
Target: 5'- --cCCGCCagGCGGCGggcgaugaaGCCCAGCagaGCGUCg -3' miRNA: 3'- caaGGUGG--UGCCGC---------CGGGUCG---CGUAG- -5' |
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23153 | 3' | -60.5 | NC_005178.1 | + | 22889 | 0.67 | 0.263346 |
Target: 5'- -gUCCuCCAUGGCGGC--GGCGCGc- -3' miRNA: 3'- caAGGuGGUGCCGCCGggUCGCGUag -5' |
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23153 | 3' | -60.5 | NC_005178.1 | + | 23335 | 0.72 | 0.127035 |
Target: 5'- -gUCUACCugGGCgacgagaucGGCaCCGGgGCGUCg -3' miRNA: 3'- caAGGUGGugCCG---------CCG-GGUCgCGUAG- -5' |
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23153 | 3' | -60.5 | NC_005178.1 | + | 23456 | 0.69 | 0.202567 |
Target: 5'- --aCgGCCAgGGC-GCCCGGCGCGa- -3' miRNA: 3'- caaGgUGGUgCCGcCGGGUCGCGUag -5' |
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23153 | 3' | -60.5 | NC_005178.1 | + | 24446 | 0.68 | 0.243693 |
Target: 5'- -cUCCAUaGCGGUGGCC-AGCGCu-- -3' miRNA: 3'- caAGGUGgUGCCGCCGGgUCGCGuag -5' |
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23153 | 3' | -60.5 | NC_005178.1 | + | 24755 | 0.67 | 0.270178 |
Target: 5'- --cCCACCAC-GCGGCCCucaaGGC-CAUUg -3' miRNA: 3'- caaGGUGGUGcCGCCGGG----UCGcGUAG- -5' |
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23153 | 3' | -60.5 | NC_005178.1 | + | 25740 | 0.68 | 0.225274 |
Target: 5'- --gUCACCAgGGCGGCC-AGgGUGUCc -3' miRNA: 3'- caaGGUGGUgCCGCCGGgUCgCGUAG- -5' |
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23153 | 3' | -60.5 | NC_005178.1 | + | 26309 | 0.75 | 0.078308 |
Target: 5'- -gUCCGCCAUGGCGGCgucacucgCCAGgGCGa- -3' miRNA: 3'- caAGGUGGUGCCGCCG--------GGUCgCGUag -5' |
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23153 | 3' | -60.5 | NC_005178.1 | + | 27195 | 0.68 | 0.225274 |
Target: 5'- --cCCACCAgcuCGGCcagcgcaGCCCGGCGCGcuUCg -3' miRNA: 3'- caaGGUGGU---GCCGc------CGGGUCGCGU--AG- -5' |
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23153 | 3' | -60.5 | NC_005178.1 | + | 27379 | 0.66 | 0.33813 |
Target: 5'- --aCCugGCCAUGGCGGCUCcugucgaugauaAGCGCcugcAUCa -3' miRNA: 3'- caaGG--UGGUGCCGCCGGG------------UCGCG----UAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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