Results 1 - 20 of 54 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 1119 | 0.66 | 0.303445 |
Target: 5'- cUUCCACCGCGGCaauaGCCCgccaacuggguguuAGCuccagggcaguucGCGUCg -3' miRNA: 3'- cAAGGUGGUGCCGc---CGGG--------------UCG-------------CGUAG- -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 2447 | 0.66 | 0.322015 |
Target: 5'- --gCCGCCAgCGGCaGCUCGGCgGCGa- -3' miRNA: 3'- caaGGUGGU-GCCGcCGGGUCG-CGUag -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 2967 | 0.68 | 0.250105 |
Target: 5'- -aUCC-UCGCGGCcGCCCgAGCGCGg- -3' miRNA: 3'- caAGGuGGUGCCGcCGGG-UCGCGUag -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 5323 | 0.74 | 0.093027 |
Target: 5'- -cUCgACCA-GGCGGCCCAGgGCGg- -3' miRNA: 3'- caAGgUGGUgCCGCCGGGUCgCGUag -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 5682 | 0.67 | 0.270178 |
Target: 5'- --aCCACCGaGGCGGUCUGGCGgaCGUUg -3' miRNA: 3'- caaGGUGGUgCCGCCGGGUCGC--GUAG- -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 6236 | 0.7 | 0.177 |
Target: 5'- --cCCGgCGCGGCGccaggcgcauaGCCCGGCGCuggGUCa -3' miRNA: 3'- caaGGUgGUGCCGC-----------CGGGUCGCG---UAG- -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 7301 | 0.73 | 0.107261 |
Target: 5'- --gCCGCC-CGGCuGCuCCAGCGCAUg -3' miRNA: 3'- caaGGUGGuGCCGcCG-GGUCGCGUAg -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 9681 | 0.67 | 0.290795 |
Target: 5'- aGUUgC-CCugGGCGGCCUggaggucGGCGUAg- -3' miRNA: 3'- -CAAgGuGGugCCGCCGGG-------UCGCGUag -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 10081 | 0.66 | 0.306481 |
Target: 5'- --gCCgACCAUa-UGGCCCGGCGCAUg -3' miRNA: 3'- caaGG-UGGUGccGCCGGGUCGCGUAg -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 10790 | 0.67 | 0.277152 |
Target: 5'- --gCCGCCAuccUGGcCGaGCCCAGCcgcgaGCGUCg -3' miRNA: 3'- caaGGUGGU---GCC-GC-CGGGUCG-----CGUAG- -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 10954 | 0.7 | 0.163073 |
Target: 5'- --gCCAgUugGGCGGcCCCAGCGaAUCc -3' miRNA: 3'- caaGGUgGugCCGCC-GGGUCGCgUAG- -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 11092 | 0.66 | 0.33 |
Target: 5'- -aUCCACCuCGGcCGGC--AGCGCcgCg -3' miRNA: 3'- caAGGUGGuGCC-GCCGggUCGCGuaG- -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 11252 | 0.69 | 0.202025 |
Target: 5'- --gCCGCCAUGGCGgacaguuGCCCGGCGg--- -3' miRNA: 3'- caaGGUGGUGCCGC-------CGGGUCGCguag -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 11393 | 0.67 | 0.291528 |
Target: 5'- --cCCGCCugGuggcugaucgguGCGGCCCuGCGCc-- -3' miRNA: 3'- caaGGUGGugC------------CGCCGGGuCGCGuag -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 11780 | 0.67 | 0.277152 |
Target: 5'- gGUUCCGCCGCaGGcCGGCCU-GCaCAUg -3' miRNA: 3'- -CAAGGUGGUG-CC-GCCGGGuCGcGUAg -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 12095 | 0.69 | 0.20805 |
Target: 5'- uUUCCGCCA--GCGcGUCCAGCGCuUCc -3' miRNA: 3'- cAAGGUGGUgcCGC-CGGGUCGCGuAG- -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 13551 | 0.69 | 0.191976 |
Target: 5'- --cUCGCCuauGCGGCGGgUCAGCGuCGUCu -3' miRNA: 3'- caaGGUGG---UGCCGCCgGGUCGC-GUAG- -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 13888 | 0.66 | 0.322015 |
Target: 5'- --gCCGCC-CGGCgugaacGGgCCAGCGCGg- -3' miRNA: 3'- caaGGUGGuGCCG------CCgGGUCGCGUag -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 14014 | 0.66 | 0.317294 |
Target: 5'- --aCCACC-CGGaCGGCCagcacgaagccauugCGGCGCcgCg -3' miRNA: 3'- caaGGUGGuGCC-GCCGG---------------GUCGCGuaG- -5' |
|||||||
23153 | 3' | -60.5 | NC_005178.1 | + | 14146 | 0.68 | 0.219402 |
Target: 5'- --gUCAgCACGGCuGCCCAGUGCu-- -3' miRNA: 3'- caaGGUgGUGCCGcCGGGUCGCGuag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home