miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23153 3' -60.5 NC_005178.1 + 11393 0.67 0.291528
Target:  5'- --cCCGCCugGuggcugaucgguGCGGCCCuGCGCc-- -3'
miRNA:   3'- caaGGUGGugC------------CGCCGGGuCGCGuag -5'
23153 3' -60.5 NC_005178.1 + 18176 0.67 0.263346
Target:  5'- -cUCUACCcUGGCGGUUCGGCugcgcggugGCGUCu -3'
miRNA:   3'- caAGGUGGuGCCGCCGGGUCG---------CGUAG- -5'
23153 3' -60.5 NC_005178.1 + 30633 0.67 0.263346
Target:  5'- --gCCACCGauuuCGGCaGCaCCAGCGCcuggGUCg -3'
miRNA:   3'- caaGGUGGU----GCCGcCG-GGUCGCG----UAG- -5'
23153 3' -60.5 NC_005178.1 + 5682 0.67 0.270178
Target:  5'- --aCCACCGaGGCGGUCUGGCGgaCGUUg -3'
miRNA:   3'- caaGGUGGUgCCGCCGGGUCGC--GUAG- -5'
23153 3' -60.5 NC_005178.1 + 24755 0.67 0.270178
Target:  5'- --cCCACCAC-GCGGCCCucaaGGC-CAUUg -3'
miRNA:   3'- caaGGUGGUGcCGCCGGG----UCGcGUAG- -5'
23153 3' -60.5 NC_005178.1 + 10790 0.67 0.277152
Target:  5'- --gCCGCCAuccUGGcCGaGCCCAGCcgcgaGCGUCg -3'
miRNA:   3'- caaGGUGGU---GCC-GC-CGGGUCG-----CGUAG- -5'
23153 3' -60.5 NC_005178.1 + 11780 0.67 0.277152
Target:  5'- gGUUCCGCCGCaGGcCGGCCU-GCaCAUg -3'
miRNA:   3'- -CAAGGUGGUG-CC-GCCGGGuCGcGUAg -5'
23153 3' -60.5 NC_005178.1 + 20651 0.67 0.277152
Target:  5'- aUUCCGuCCAUGGa-GCCCugGGCGCGUg -3'
miRNA:   3'- cAAGGU-GGUGCCgcCGGG--UCGCGUAg -5'
23153 3' -60.5 NC_005178.1 + 21873 0.67 0.284268
Target:  5'- -cUCCcCCAacgugcuccUGGuCGGCCCGGCGCu-- -3'
miRNA:   3'- caAGGuGGU---------GCC-GCCGGGUCGCGuag -5'
23153 3' -60.5 NC_005178.1 + 2967 0.68 0.250105
Target:  5'- -aUCC-UCGCGGCcGCCCgAGCGCGg- -3'
miRNA:   3'- caAGGuGGUGCCGcCGGG-UCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 23456 0.69 0.202567
Target:  5'- --aCgGCCAgGGC-GCCCGGCGCGa- -3'
miRNA:   3'- caaGgUGGUgCCGcCGGGUCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 21205 0.69 0.199337
Target:  5'- --gCCGCCACGGaCGGCaccgaaacccgcuccCCGGCcggccGCAUCa -3'
miRNA:   3'- caaGGUGGUGCC-GCCG---------------GGUCG-----CGUAG- -5'
23153 3' -60.5 NC_005178.1 + 17592 0.75 0.069762
Target:  5'- cGUUCCGuuGaCGGCGGCCgCuGUGCGUCg -3'
miRNA:   3'- -CAAGGUggU-GCCGCCGG-GuCGCGUAG- -5'
23153 3' -60.5 NC_005178.1 + 26309 0.75 0.078308
Target:  5'- -gUCCGCCAUGGCGGCgucacucgCCAGgGCGa- -3'
miRNA:   3'- caAGGUGGUGCCGCCG--------GGUCgCGUag -5'
23153 3' -60.5 NC_005178.1 + 7301 0.73 0.107261
Target:  5'- --gCCGCC-CGGCuGCuCCAGCGCAUg -3'
miRNA:   3'- caaGGUGGuGCCGcCG-GGUCGCGUAg -5'
23153 3' -60.5 NC_005178.1 + 31512 0.73 0.110343
Target:  5'- cUUCCGCgACGGCGGUCUGGCGaugCu -3'
miRNA:   3'- cAAGGUGgUGCCGCCGGGUCGCguaG- -5'
23153 3' -60.5 NC_005178.1 + 23335 0.72 0.127035
Target:  5'- -gUCUACCugGGCgacgagaucGGCaCCGGgGCGUCg -3'
miRNA:   3'- caAGGUGGugCCG---------CCG-GGUCgCGUAG- -5'
23153 3' -60.5 NC_005178.1 + 22278 0.71 0.154343
Target:  5'- --cCCGCCagGCGGCGggcgaugaaGCCCAGCagaGCGUCg -3'
miRNA:   3'- caaGGUGG--UGCCGC---------CGGGUCG---CGUAG- -5'
23153 3' -60.5 NC_005178.1 + 13551 0.69 0.191976
Target:  5'- --cUCGCCuauGCGGCGGgUCAGCGuCGUCu -3'
miRNA:   3'- caaGGUGG---UGCCGCCgGGUCGC-GUAG- -5'
23153 3' -60.5 NC_005178.1 + 30811 0.69 0.197209
Target:  5'- -cUCgACCugGGcCGGCgucuacgCGGCGCAUCa -3'
miRNA:   3'- caAGgUGGugCC-GCCGg------GUCGCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.