miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23153 3' -60.5 NC_005178.1 + 33793 0.77 0.047765
Target:  5'- --gCCGCCcuUGGCgauGGCCCGGCGCGUCa -3'
miRNA:   3'- caaGGUGGu-GCCG---CCGGGUCGCGUAG- -5'
23153 3' -60.5 NC_005178.1 + 15282 0.68 0.243693
Target:  5'- --cCCGCCGCcuGGCGGgCCAGCcugGCgGUCg -3'
miRNA:   3'- caaGGUGGUG--CCGCCgGGUCG---CG-UAG- -5'
23153 3' -60.5 NC_005178.1 + 22889 0.67 0.263346
Target:  5'- -gUCCuCCAUGGCGGC--GGCGCGc- -3'
miRNA:   3'- caAGGuGGUGCCGCCGggUCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 27379 0.66 0.33813
Target:  5'- --aCCugGCCAUGGCGGCUCcugucgaugauaAGCGCcugcAUCa -3'
miRNA:   3'- caaGG--UGGUGCCGCCGGG------------UCGCG----UAG- -5'
23153 3' -60.5 NC_005178.1 + 27955 0.72 0.130643
Target:  5'- -gUCCAUguugaaGCGGCGaccGCCCAGCGCAg- -3'
miRNA:   3'- caAGGUGg-----UGCCGC---CGGGUCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 22116 0.7 0.158654
Target:  5'- -aUCCACgAUGGCGGCCaucGuUGCGUCu -3'
miRNA:   3'- caAGGUGgUGCCGCCGGgu-C-GCGUAG- -5'
23153 3' -60.5 NC_005178.1 + 6236 0.7 0.177
Target:  5'- --cCCGgCGCGGCGccaggcgcauaGCCCGGCGCuggGUCa -3'
miRNA:   3'- caaGGUgGUGCCGC-----------CGGGUCGCG---UAG- -5'
23153 3' -60.5 NC_005178.1 + 20328 0.69 0.186864
Target:  5'- cGUUCCGCCACGuuccaGGUuaucgaCCAGgGCGUCg -3'
miRNA:   3'- -CAAGGUGGUGCcg---CCG------GGUCgCGUAG- -5'
23153 3' -60.5 NC_005178.1 + 14146 0.68 0.219402
Target:  5'- --gUCAgCACGGCuGCCCAGUGCu-- -3'
miRNA:   3'- caaGGUgGUGCCGcCGGGUCGCGuag -5'
23153 3' -60.5 NC_005178.1 + 24446 0.68 0.243693
Target:  5'- -cUCCAUaGCGGUGGCC-AGCGCu-- -3'
miRNA:   3'- caAGGUGgUGCCGCCGGgUCGCGuag -5'
23153 3' -60.5 NC_005178.1 + 25740 0.68 0.225274
Target:  5'- --gUCACCAgGGCGGCC-AGgGUGUCc -3'
miRNA:   3'- caaGGUGGUgCCGCCGGgUCgCGUAG- -5'
23153 3' -60.5 NC_005178.1 + 12095 0.69 0.20805
Target:  5'- uUUCCGCCA--GCGcGUCCAGCGCuUCc -3'
miRNA:   3'- cAAGGUGGUgcCGC-CGGGUCGCGuAG- -5'
23153 3' -60.5 NC_005178.1 + 35810 0.75 0.069762
Target:  5'- -gUCCGCuCAaGGCGGCCCAGUucggcgagcaguGCAUCg -3'
miRNA:   3'- caAGGUG-GUgCCGCCGGGUCG------------CGUAG- -5'
23153 3' -60.5 NC_005178.1 + 27195 0.68 0.225274
Target:  5'- --cCCACCAgcuCGGCcagcgcaGCCCGGCGCGcuUCg -3'
miRNA:   3'- caaGGUGGU---GCCGc------CGGGUCGCGU--AG- -5'
23153 3' -60.5 NC_005178.1 + 17628 0.75 0.076082
Target:  5'- --aUCACUGCGGCGGCaCUGGCgGCAUCg -3'
miRNA:   3'- caaGGUGGUGCCGCCG-GGUCG-CGUAG- -5'
23153 3' -60.5 NC_005178.1 + 11252 0.69 0.202025
Target:  5'- --gCCGCCAUGGCGgacaguuGCCCGGCGg--- -3'
miRNA:   3'- caaGGUGGUGCCGC-------CGGGUCGCguag -5'
23153 3' -60.5 NC_005178.1 + 36347 0.68 0.237418
Target:  5'- -gUCCAgCGCGGCGG-CgAGUGCAc- -3'
miRNA:   3'- caAGGUgGUGCCGCCgGgUCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 17803 0.67 0.263346
Target:  5'- --gCCGCCAUGGUGGCgacgguCgAGCGCGg- -3'
miRNA:   3'- caaGGUGGUGCCGCCG------GgUCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 5323 0.74 0.093027
Target:  5'- -cUCgACCA-GGCGGCCCAGgGCGg- -3'
miRNA:   3'- caAGgUGGUgCCGCCGGGUCgCGUag -5'
23153 3' -60.5 NC_005178.1 + 10954 0.7 0.163073
Target:  5'- --gCCAgUugGGCGGcCCCAGCGaAUCc -3'
miRNA:   3'- caaGGUgGugCCGCC-GGGUCGCgUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.