miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23153 3' -60.5 NC_005178.1 + 27445 1.09 0.000149
Target:  5'- aGUUCCACCACGGCGGCCCAGCGCAUCa -3'
miRNA:   3'- -CAAGGUGGUGCCGCCGGGUCGCGUAG- -5'
23153 3' -60.5 NC_005178.1 + 33793 0.77 0.047765
Target:  5'- --gCCGCCcuUGGCgauGGCCCGGCGCGUCa -3'
miRNA:   3'- caaGGUGGu-GCCG---CCGGGUCGCGUAG- -5'
23153 3' -60.5 NC_005178.1 + 17592 0.75 0.069762
Target:  5'- cGUUCCGuuGaCGGCGGCCgCuGUGCGUCg -3'
miRNA:   3'- -CAAGGUggU-GCCGCCGG-GuCGCGUAG- -5'
23153 3' -60.5 NC_005178.1 + 35810 0.75 0.069762
Target:  5'- -gUCCGCuCAaGGCGGCCCAGUucggcgagcaguGCAUCg -3'
miRNA:   3'- caAGGUG-GUgCCGCCGGGUCG------------CGUAG- -5'
23153 3' -60.5 NC_005178.1 + 17628 0.75 0.076082
Target:  5'- --aUCACUGCGGCGGCaCUGGCgGCAUCg -3'
miRNA:   3'- caaGGUGGUGCCGCCG-GGUCG-CGUAG- -5'
23153 3' -60.5 NC_005178.1 + 26309 0.75 0.078308
Target:  5'- -gUCCGCCAUGGCGGCgucacucgCCAGgGCGa- -3'
miRNA:   3'- caAGGUGGUGCCGCCG--------GGUCgCGUag -5'
23153 3' -60.5 NC_005178.1 + 5323 0.74 0.093027
Target:  5'- -cUCgACCA-GGCGGCCCAGgGCGg- -3'
miRNA:   3'- caAGgUGGUgCCGCCGGGUCgCGUag -5'
23153 3' -60.5 NC_005178.1 + 7301 0.73 0.107261
Target:  5'- --gCCGCC-CGGCuGCuCCAGCGCAUg -3'
miRNA:   3'- caaGGUGGuGCCGcCG-GGUCGCGUAg -5'
23153 3' -60.5 NC_005178.1 + 31512 0.73 0.110343
Target:  5'- cUUCCGCgACGGCGGUCUGGCGaugCu -3'
miRNA:   3'- cAAGGUGgUGCCGCCGGGUCGCguaG- -5'
23153 3' -60.5 NC_005178.1 + 23335 0.72 0.127035
Target:  5'- -gUCUACCugGGCgacgagaucGGCaCCGGgGCGUCg -3'
miRNA:   3'- caAGGUGGugCCG---------CCG-GGUCgCGUAG- -5'
23153 3' -60.5 NC_005178.1 + 27955 0.72 0.130643
Target:  5'- -gUCCAUguugaaGCGGCGaccGCCCAGCGCAg- -3'
miRNA:   3'- caAGGUGg-----UGCCGC---CGGGUCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 22278 0.71 0.154343
Target:  5'- --cCCGCCagGCGGCGggcgaugaaGCCCAGCagaGCGUCg -3'
miRNA:   3'- caaGGUGG--UGCCGC---------CGGGUCG---CGUAG- -5'
23153 3' -60.5 NC_005178.1 + 22116 0.7 0.158654
Target:  5'- -aUCCACgAUGGCGGCCaucGuUGCGUCu -3'
miRNA:   3'- caAGGUGgUGCCGCCGGgu-C-GCGUAG- -5'
23153 3' -60.5 NC_005178.1 + 10954 0.7 0.163073
Target:  5'- --gCCAgUugGGCGGcCCCAGCGaAUCc -3'
miRNA:   3'- caaGGUgGugCCGCC-GGGUCGCgUAG- -5'
23153 3' -60.5 NC_005178.1 + 6236 0.7 0.177
Target:  5'- --cCCGgCGCGGCGccaggcgcauaGCCCGGCGCuggGUCa -3'
miRNA:   3'- caaGGUgGUGCCGC-----------CGGGUCGCG---UAG- -5'
23153 3' -60.5 NC_005178.1 + 20328 0.69 0.186864
Target:  5'- cGUUCCGCCACGuuccaGGUuaucgaCCAGgGCGUCg -3'
miRNA:   3'- -CAAGGUGGUGCcg---CCG------GGUCgCGUAG- -5'
23153 3' -60.5 NC_005178.1 + 13551 0.69 0.191976
Target:  5'- --cUCGCCuauGCGGCGGgUCAGCGuCGUCu -3'
miRNA:   3'- caaGGUGG---UGCCGCCgGGUCGC-GUAG- -5'
23153 3' -60.5 NC_005178.1 + 30811 0.69 0.197209
Target:  5'- -cUCgACCugGGcCGGCgucuacgCGGCGCAUCa -3'
miRNA:   3'- caAGgUGGugCC-GCCGg------GUCGCGUAG- -5'
23153 3' -60.5 NC_005178.1 + 21205 0.69 0.199337
Target:  5'- --gCCGCCACGGaCGGCaccgaaacccgcuccCCGGCcggccGCAUCa -3'
miRNA:   3'- caaGGUGGUGCC-GCCG---------------GGUCG-----CGUAG- -5'
23153 3' -60.5 NC_005178.1 + 11252 0.69 0.202025
Target:  5'- --gCCGCCAUGGCGgacaguuGCCCGGCGg--- -3'
miRNA:   3'- caaGGUGGUGCCGC-------CGGGUCGCguag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.