miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23153 3' -60.5 NC_005178.1 + 36347 0.68 0.237418
Target:  5'- -gUCCAgCGCGGCGG-CgAGUGCAc- -3'
miRNA:   3'- caAGGUgGUGCCGCCgGgUCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 35810 0.75 0.069762
Target:  5'- -gUCCGCuCAaGGCGGCCCAGUucggcgagcaguGCAUCg -3'
miRNA:   3'- caAGGUG-GUgCCGCCGGGUCG------------CGUAG- -5'
23153 3' -60.5 NC_005178.1 + 33793 0.77 0.047765
Target:  5'- --gCCGCCcuUGGCgauGGCCCGGCGCGUCa -3'
miRNA:   3'- caaGGUGGu-GCCG---CCGGGUCGCGUAG- -5'
23153 3' -60.5 NC_005178.1 + 31512 0.73 0.110343
Target:  5'- cUUCCGCgACGGCGGUCUGGCGaugCu -3'
miRNA:   3'- cAAGGUGgUGCCGCCGGGUCGCguaG- -5'
23153 3' -60.5 NC_005178.1 + 31141 0.66 0.304202
Target:  5'- --gUCAUCGCGGCGcGCCUcgccgcgacaaucgAGCGCAg- -3'
miRNA:   3'- caaGGUGGUGCCGC-CGGG--------------UCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 30811 0.69 0.197209
Target:  5'- -cUCgACCugGGcCGGCgucuacgCGGCGCAUCa -3'
miRNA:   3'- caAGgUGGugCC-GCCGg------GUCGCGUAG- -5'
23153 3' -60.5 NC_005178.1 + 30633 0.67 0.263346
Target:  5'- --gCCACCGauuuCGGCaGCaCCAGCGCcuggGUCg -3'
miRNA:   3'- caaGGUGGU----GCCGcCG-GGUCGCG----UAG- -5'
23153 3' -60.5 NC_005178.1 + 30501 0.66 0.322015
Target:  5'- ---gCACuCAauGCGGCUCAGCGCGg- -3'
miRNA:   3'- caagGUG-GUgcCGCCGGGUCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 28987 0.67 0.291528
Target:  5'- --cCCugGCCugGGCGGCaCCGauaGCAUCu -3'
miRNA:   3'- caaGG--UGGugCCGCCG-GGUcg-CGUAG- -5'
23153 3' -60.5 NC_005178.1 + 28755 0.68 0.219402
Target:  5'- --gCCgACCugGuGCGGCUCAGCGguUg -3'
miRNA:   3'- caaGG-UGGugC-CGCCGGGUCGCguAg -5'
23153 3' -60.5 NC_005178.1 + 27955 0.72 0.130643
Target:  5'- -gUCCAUguugaaGCGGCGaccGCCCAGCGCAg- -3'
miRNA:   3'- caAGGUGg-----UGCCGC---CGGGUCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 27882 0.66 0.314176
Target:  5'- --aCCGCCuCGGcCGGCUCGGCGa--- -3'
miRNA:   3'- caaGGUGGuGCC-GCCGGGUCGCguag -5'
23153 3' -60.5 NC_005178.1 + 27625 0.67 0.266062
Target:  5'- aGUUCCACCAguaccuggucaaucUGGCgcGGCCCuaaguccuuggccgAGCGCAc- -3'
miRNA:   3'- -CAAGGUGGU--------------GCCG--CCGGG--------------UCGCGUag -5'
23153 3' -60.5 NC_005178.1 + 27445 1.09 0.000149
Target:  5'- aGUUCCACCACGGCGGCCCAGCGCAUCa -3'
miRNA:   3'- -CAAGGUGGUGCCGCCGGGUCGCGUAG- -5'
23153 3' -60.5 NC_005178.1 + 27379 0.66 0.33813
Target:  5'- --aCCugGCCAUGGCGGCUCcugucgaugauaAGCGCcugcAUCa -3'
miRNA:   3'- caaGG--UGGUGCCGCCGGG------------UCGCG----UAG- -5'
23153 3' -60.5 NC_005178.1 + 27195 0.68 0.225274
Target:  5'- --cCCACCAgcuCGGCcagcgcaGCCCGGCGCGcuUCg -3'
miRNA:   3'- caaGGUGGU---GCCGc------CGGGUCGCGU--AG- -5'
23153 3' -60.5 NC_005178.1 + 26309 0.75 0.078308
Target:  5'- -gUCCGCCAUGGCGGCgucacucgCCAGgGCGa- -3'
miRNA:   3'- caAGGUGGUGCCGCCG--------GGUCgCGUag -5'
23153 3' -60.5 NC_005178.1 + 25740 0.68 0.225274
Target:  5'- --gUCACCAgGGCGGCC-AGgGUGUCc -3'
miRNA:   3'- caaGGUGGUgCCGCCGGgUCgCGUAG- -5'
23153 3' -60.5 NC_005178.1 + 24755 0.67 0.270178
Target:  5'- --cCCACCAC-GCGGCCCucaaGGC-CAUUg -3'
miRNA:   3'- caaGGUGGUGcCGCCGGG----UCGcGUAG- -5'
23153 3' -60.5 NC_005178.1 + 24446 0.68 0.243693
Target:  5'- -cUCCAUaGCGGUGGCC-AGCGCu-- -3'
miRNA:   3'- caAGGUGgUGCCGCCGGgUCGCGuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.