miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23155 3' -59.4 NC_005178.1 + 15247 0.67 0.342082
Target:  5'- gCUGCGCCAcuUCCCggccgcagACCACGacgauggcCCCGAc -3'
miRNA:   3'- gGGCGCGGU--AGGGa-------UGGUGC--------GGGUUc -5'
23155 3' -59.4 NC_005178.1 + 23740 0.68 0.288189
Target:  5'- gUCGCGCCgaagccgaGUUCCUGCUGCGCCg--- -3'
miRNA:   3'- gGGCGCGG--------UAGGGAUGGUGCGGguuc -5'
23155 3' -59.4 NC_005178.1 + 28961 0.68 0.295461
Target:  5'- gCCgUGCGCCAggugaCCCUG-CGCGCCCcuGg -3'
miRNA:   3'- -GG-GCGCGGUa----GGGAUgGUGCGGGuuC- -5'
23155 3' -59.4 NC_005178.1 + 11742 0.68 0.325972
Target:  5'- aCCCGCGCaUAUgCCacgGCCgugGCCCGAGc -3'
miRNA:   3'- -GGGCGCG-GUAgGGa--UGGug-CGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 9019 0.67 0.333151
Target:  5'- cUCCGCGCCGUUgccggcuucgaCCUggagcaaugccgcGCCGCGCUCGc- -3'
miRNA:   3'- -GGGCGCGGUAG-----------GGA-------------UGGUGCGGGUuc -5'
23155 3' -59.4 NC_005178.1 + 34714 0.67 0.333956
Target:  5'- aCCCgGCGCggCAUCCCUgaaACCGuCGUUCGGGu -3'
miRNA:   3'- -GGG-CGCG--GUAGGGA---UGGU-GCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 9380 0.67 0.342082
Target:  5'- aCCGCaGCaggaaAUCCaCUacACCACGgCCAAGa -3'
miRNA:   3'- gGGCG-CGg----UAGG-GA--UGGUGCgGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 19365 0.67 0.342082
Target:  5'- aCCCGCGCUA--CCUGCgCGggcUGCUCAAGa -3'
miRNA:   3'- -GGGCGCGGUagGGAUG-GU---GCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 31303 0.67 0.342082
Target:  5'- aCCCaGCGCCGggcuaugcgCCUggcGCCGCGCCgGGa -3'
miRNA:   3'- -GGG-CGCGGUa--------GGGa--UGGUGCGGgUUc -5'
23155 3' -59.4 NC_005178.1 + 18572 0.69 0.274069
Target:  5'- aCCCGCGCCGaCCgUgACCAgGCgCAGa -3'
miRNA:   3'- -GGGCGCGGUaGGgA-UGGUgCGgGUUc -5'
23155 3' -59.4 NC_005178.1 + 19492 0.7 0.2412
Target:  5'- uCCCGCGCCGUauaCCguCCAguuCGCCCuGGa -3'
miRNA:   3'- -GGGCGCGGUAg--GGauGGU---GCGGGuUC- -5'
23155 3' -59.4 NC_005178.1 + 10042 0.7 0.2412
Target:  5'- aCCGCGC--UCCUgGCCAgCGCCCAu- -3'
miRNA:   3'- gGGCGCGguAGGGaUGGU-GCGGGUuc -5'
23155 3' -59.4 NC_005178.1 + 10787 0.75 0.106878
Target:  5'- gCCGcCGCCAUCCUgGCCGaGCCCAGc -3'
miRNA:   3'- gGGC-GCGGUAGGGaUGGUgCGGGUUc -5'
23155 3' -59.4 NC_005178.1 + 20428 0.74 0.126396
Target:  5'- gCUGCGCgAaaCCCUcgGCCugGCCCAGGa -3'
miRNA:   3'- gGGCGCGgUa-GGGA--UGGugCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 12759 0.74 0.126396
Target:  5'- aCCCGCGaCG-CCCUgcGCCGCGCCUAc- -3'
miRNA:   3'- -GGGCGCgGUaGGGA--UGGUGCGGGUuc -5'
23155 3' -59.4 NC_005178.1 + 16720 0.71 0.190357
Target:  5'- gCCgGCGCCcugguccucgcAUCgCUGCgCugGCCCAGGu -3'
miRNA:   3'- -GGgCGCGG-----------UAGgGAUG-GugCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 4809 0.71 0.195505
Target:  5'- aUCGcCGCCG-CgCCUACUACGUCCAGGc -3'
miRNA:   3'- gGGC-GCGGUaG-GGAUGGUGCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 1444 0.7 0.223099
Target:  5'- gCCCGCGCUAUaCCUggugagugcaACUAcgcCGCCCAGGu -3'
miRNA:   3'- -GGGCGCGGUAgGGA----------UGGU---GCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 4428 0.7 0.229
Target:  5'- aCCGCaGCCAccaCCCaagccACCAcCGCCCAGGu -3'
miRNA:   3'- gGGCG-CGGUa--GGGa----UGGU-GCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 2711 0.7 0.2412
Target:  5'- aCCCGCGCCG-CgCUGCUGaacgcCGCCCuGGg -3'
miRNA:   3'- -GGGCGCGGUaGgGAUGGU-----GCGGGuUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.