miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23155 3' -59.4 NC_005178.1 + 1217 0.67 0.35876
Target:  5'- gCCGCGCUGgaccugagCCCUGugaagcUCugGCCCGAa -3'
miRNA:   3'- gGGCGCGGUa-------GGGAU------GGugCGGGUUc -5'
23155 3' -59.4 NC_005178.1 + 12759 0.74 0.126396
Target:  5'- aCCCGCGaCG-CCCUgcGCCGCGCCUAc- -3'
miRNA:   3'- -GGGCGCgGUaGGGA--UGGUGCGGGUuc -5'
23155 3' -59.4 NC_005178.1 + 4809 0.71 0.195505
Target:  5'- aUCGcCGCCG-CgCCUACUACGUCCAGGc -3'
miRNA:   3'- gGGC-GCGGUaG-GGAUGGUGCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 16720 0.71 0.190357
Target:  5'- gCCgGCGCCcugguccucgcAUCgCUGCgCugGCCCAGGu -3'
miRNA:   3'- -GGgCGCGG-----------UAGgGAUG-GugCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 1444 0.7 0.223099
Target:  5'- gCCCGCGCUAUaCCUggugagugcaACUAcgcCGCCCAGGu -3'
miRNA:   3'- -GGGCGCGGUAgGGA----------UGGU---GCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 9380 0.67 0.342082
Target:  5'- aCCGCaGCaggaaAUCCaCUacACCACGgCCAAGa -3'
miRNA:   3'- gGGCG-CGg----UAGG-GA--UGGUGCgGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 19365 0.67 0.342082
Target:  5'- aCCCGCGCUA--CCUGCgCGggcUGCUCAAGa -3'
miRNA:   3'- -GGGCGCGGUagGGAUG-GU---GCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 31303 0.67 0.342082
Target:  5'- aCCCaGCGCCGggcuaugcgCCUggcGCCGCGCCgGGa -3'
miRNA:   3'- -GGG-CGCGGUa--------GGGa--UGGUGCGGgUUc -5'
23155 3' -59.4 NC_005178.1 + 15247 0.67 0.342082
Target:  5'- gCUGCGCCAcuUCCCggccgcagACCACGacgauggcCCCGAc -3'
miRNA:   3'- gGGCGCGGU--AGGGa-------UGGUGC--------GGGUUc -5'
23155 3' -59.4 NC_005178.1 + 12150 0.67 0.350351
Target:  5'- aCCCGCGCCua-CC-GCgACGUCCuGGa -3'
miRNA:   3'- -GGGCGCGGuagGGaUGgUGCGGGuUC- -5'
23155 3' -59.4 NC_005178.1 + 10787 0.75 0.106878
Target:  5'- gCCGcCGCCAUCCUgGCCGaGCCCAGc -3'
miRNA:   3'- gGGC-GCGGUAGGGaUGGUgCGGGUUc -5'
23155 3' -59.4 NC_005178.1 + 7175 0.67 0.365589
Target:  5'- gCCGCGCCuGUCCacgcaacccgcaUACCGCcCCCAu- -3'
miRNA:   3'- gGGCGCGG-UAGGg-----------AUGGUGcGGGUuc -5'
23155 3' -59.4 NC_005178.1 + 16525 0.67 0.375998
Target:  5'- gCCGCGCC--CCCcGCCugGUCUucGa -3'
miRNA:   3'- gGGCGCGGuaGGGaUGGugCGGGuuC- -5'
23155 3' -59.4 NC_005178.1 + 20381 0.66 0.393787
Target:  5'- aCCGCccugaaGCCggCCCUGg-ACGCCCAGGc -3'
miRNA:   3'- gGGCG------CGGuaGGGAUggUGCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 31588 0.66 0.393787
Target:  5'- aCCGcCGCCggCCUggACCugGUCCGc- -3'
miRNA:   3'- gGGC-GCGGuaGGGa-UGGugCGGGUuc -5'
23155 3' -59.4 NC_005178.1 + 13154 0.66 0.393787
Target:  5'- aUCCGUgaGCgGUUCCcGCagCACGCCCAGGc -3'
miRNA:   3'- -GGGCG--CGgUAGGGaUG--GUGCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 16802 0.66 0.402884
Target:  5'- gCUG-GCCAg-CCUGCCG-GCCCAGGa -3'
miRNA:   3'- gGGCgCGGUagGGAUGGUgCGGGUUC- -5'
23155 3' -59.4 NC_005178.1 + 24416 0.66 0.402884
Target:  5'- cCCUGCGCUAUaagggcaUCaACCugGCCgAAGg -3'
miRNA:   3'- -GGGCGCGGUAg------GGaUGGugCGGgUUC- -5'
23155 3' -59.4 NC_005178.1 + 2491 0.66 0.420529
Target:  5'- gCUGCGCUcgCCCUcgguaacGCCcugauCGCCCGc- -3'
miRNA:   3'- gGGCGCGGuaGGGA-------UGGu----GCGGGUuc -5'
23155 3' -59.4 NC_005178.1 + 29252 0.66 0.42147
Target:  5'- gCCgGCGCCGgcuucaUCCUGCCACcuuGUCCGc- -3'
miRNA:   3'- -GGgCGCGGUa-----GGGAUGGUG---CGGGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.